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Equivalence class NR_2.5_42622.17 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14Y4P|1|1B (rep)5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
24Y4O|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
34W2F|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
44Y4O|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
54W2F|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
64Y4P|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18

Release history

Release2.76
Date2016-05-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_42622.17NR_all_42622.162.76(6) 4W2F|1|BB, 4W2F|1|DB, 4Y4O|1|1B, 4Y4O|1|2B, 4Y4P|1|1B, 4Y4P|1|2B(0) (263) 1VVJ|1|RB, 1VVJ|1|YB, 1VY4|1|BB, 1VY4|1|DB, 1VY5|1|BB, 1VY5|1|DB, 1VY6|1|BB, 1VY6|1|DB, 1VY7|1|BB, 1VY7|1|DB, 4L47|1|RB, 4L47|1|YB, 4L71|1|RB, 4L71|1|YB, 4LEL|1|RB, 4LEL|1|YB, 4LFZ|1|RB, 4LFZ|1|YB, 4LNT|1|RB, 4LNT|1|YB, 4LSK|1|RB, 4LSK|1|YB, 4LT8|1|RB, 4LT8|1|YB, 4P6F|1|RB, 4P6F|1|YB, 4P70|1|RB, 4P70|1|YB, 4TUA|1|RB, 4TUA|1|YB, 4TUB|1|RB, 4TUB|1|YB, 4TUC|1|RB, 4TUC|1|YB, 4TUD|1|RB, 4TUD|1|YB, 4TUE|1|RB, 4TUE|1|YB, 4V42|1|BB, 4V4I|1|x, 4V4J|1|x, 4V4P|1|AB, 4V4R|1|BB, 4V4S|1|BB, 4V4T|1|BB, 4V4X|1|BB, 4V4Y|1|BB, 4V4Z|1|BB, 4V51|1|BB, 4V51|1|DB, 4V5A|1|BB, 4V5A|1|DB, 4V5C|1|BB, 4V5C|1|DB, 4V5D|1|BB, 4V5D|1|DB, 4V5E|1|BB, 4V5E|1|DB, 4V5F|1|BB, 4V5F|1|DB, 4V5G|1|BB, 4V5G|1|DB, 4V5J|1|BB, 4V5J|1|DB, 4V5K|1|BB, 4V5K|1|DB, 4V5L|1|BB, 4V5M|1|BB, 4V5N|1|BB, 4V5P|1|BB, 4V5P|1|DB, 4V5Q|1|BB, 4V5Q|1|DB, 4V5R|1|BB, 4V5R|1|DB, 4V5S|1|BB, 4V5S|1|DB, 4V63|1|BB, 4V63|1|DB, 4V67|1|BB, 4V67|1|DB, 4V68|1|BB, 4V6A|1|BB, 4V6A|1|DB, 4V6F|1|AB, 4V6F|1|DB, 4V6G|1|BB, 4V6G|1|DB, 4V7J|1|AB, 4V7J|1|BB, 4V7K|1|AB, 4V7K|1|BB, 4V7L|1|BB, 4V7L|1|DB, 4V7M|1|BB, 4V7M|1|DB, 4V7P|1|BB, 4V7P|1|CB, 4V7W|1|BB, 4V7W|1|DB, 4V7X|1|BB, 4V7X|1|DB, 4V7Y|1|BB, 4V7Y|1|DB, 4V7Z|1|BB, 4V7Z|1|DB, 4V83|1|BB, 4V83|1|DB, 4V84|1|BB, 4V84|1|DB, 4V87|1|AB, 4V87|1|DB, 4V8A|1|AB, 4V8A|1|BB, 4V8B|1|BB, 4V8B|1|DB, 4V8C|1|AB, 4V8C|1|BB, 4V8D|1|BB, 4V8D|1|DB, 4V8E|1|AB, 4V8E|1|CB, 4V8F|1|AB, 4V8F|1|DB, 4V8G|1|BB, 4V8G|1|DB, 4V8H|1|BB, 4V8H|1|DB, 4V8I|1|BB, 4V8I|1|DB, 4V8J|1|BB, 4V8J|1|DB, 4V8N|1|BB, 4V8N|1|DB, 4V8O|1|BB, 4V8Q|1|AB, 4V8U|1|BB, 4V8U|1|DB, 4V8X|1|BB, 4V8X|1|DB, 4V90|1|BB, 4V95|1|BB, 4V95|1|DB, 4V97|1|BB, 4V97|1|DB, 4V9A|1|BB, 4V9A|1|DB, 4V9B|1|BB, 4V9B|1|DB, 4V9H|1|BB, 4V9I|1|BB, 4V9I|1|DB, 4V9J|1|BB, 4V9J|1|DB, 4V9K|1|BB, 4V9K|1|DB, 4V9L|1|BB, 4V9L|1|DB, 4V9M|1|BB, 4V9M|1|DB, 4V9N|1|BB, 4V9N|1|DB, 4V9Q|1|AB, 4V9Q|1|CB, 4V9R|1|BB, 4V9R|1|DB, 4V9S|1|BB, 4V9S|1|DB, 4W29|1|BB, 4W29|1|DB, 4W2E|1|B, 4W2G|1|BB, 4W2G|1|DB, 4W2H|1|BB, 4W2H|1|DB, 4W2I|1|BB, 4W2I|1|DB, 4W4G|1|RB, 4W4G|1|YB, 4WPO|1|AB, 4WPO|1|CB, 4WQ1|1|16, 4WQ1|1|1J, 4WQF|1|AB, 4WQF|1|CB, 4WQR|1|16, 4WQR|1|1J, 4WQU|1|AB, 4WQU|1|CB, 4WQY|1|AB, 4WQY|1|CB, 4WR6|1|16, 4WR6|1|1J, 4WRA|1|16, 4WRA|1|1J, 4WRO|1|16, 4WRO|1|1J, 4WSD|1|16, 4WSD|1|1J, 4WSM|1|16, 4WSM|1|1J, 4WT1|1|16, 4WT1|1|1J, 4WT8|1|Cs, 4WT8|1|Ds, 4WU1|1|16, 4WU1|1|1J, 4WZD|1|16, 4WZD|1|1J, 4WZO|1|16, 4WZO|1|1J, 4XEJ|1|A5S, 4XEJ|1|B5S, 4YPB|1|RB, 4YPB|1|YB, 4YZV|1|RB, 4YZV|1|YB, 4Z3S|1|1B, 4Z3S|1|2B, 4Z8C|1|1B, 4Z8C|1|2B, 4ZER|1|1B, 4ZER|1|2B, 5A9Z|1|AB, 5AA0|1|AB, 5D8B|1|AD, 5D8B|1|WC, 5DOX|1|1B, 5DOX|1|2B, 5DOY|1|1B, 5DOY|1|2B, 5E7K|1|16, 5E7K|1|1J, 5E81|1|16, 5E81|1|1J, 5EL4|1|16, 5EL4|1|1J, 5EL5|1|16, 5EL5|1|1J, 5EL6|1|16, 5EL6|1|1J, 5EL7|1|16, 5EL7|1|1J, 5F8K|1|1B, 5F8K|1|2B, 5FDU|1|1B, 5FDU|1|2B, 5FDV|1|1B, 5FDV|1|2B, 5HAU|1|1B, 5HAU|1|2B, 5HCP|1|1B, 5HCP|1|2B, 5HCQ|1|1B, 5HCQ|1|2B, 5HCR|1|1B, 5HCR|1|2B, 5HD1|1|1B, 5HD1|1|2B, 5J4B|1|1B, 5J4B|1|2B, 5J4C|1|1B, 5J4C|1|2B

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14Y4P|1|1BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.5120
24W2F|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.4120
34Y4O|1|1BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.3120
44Y4O|1|2BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.3120
54W2F|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.4120
64Y4P|1|2BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.5120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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