RNA 3D Hub //

Equivalence class NR_2.5_43481.5 Current

Showing 1 to 9 of 9 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17UW1|1|a (rep)Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii 70S ribosome-Streptothricin-D complexElectron microscopy2.2115282023-04-19
27UVZ|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNAElectron microscopy2.2115282023-04-19
37UVX|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii 70S ribosome-Streptothricin-F complexElectron microscopy2.3515282023-04-19
47UVW|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome: 70S with E-site tRNAElectron microscopy2.3715282023-04-19
57RYG|1|aSmall subunit ribosomal RNA16S Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70SElectron microscopy2.3815282022-02-02
67UVY|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNAElectron microscopy2.3915282023-04-19
77RYH|1|aSmall subunit ribosomal RNA16S Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-TP-6076 complex: Empty 70SElectron microscopy2.4315282022-02-02
87UVV|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNAElectron microscopy2.515282023-04-19
97M4Y|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAElectron microscopy2.515282021-05-19

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.3923.393
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-182025-06-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 9 of 9 entries
#SViewPDBTitleMethodResolution#NTs
17M4Y|1|aA. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAELECTRON MICROSCOPY2.51528
27UVW|1|aA. baumannii ribosome: 70S with E-site tRNAELECTRON MICROSCOPY2.371528
37UVZ|1|aA. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNAELECTRON MICROSCOPY2.211528
47RYG|1|aA. baumannii Ribosome-TP-6076 complex: E-site tRNA 70SELECTRON MICROSCOPY2.381528
57RYH|1|aA. baumannii Ribosome-TP-6076 complex: Empty 70SELECTRON MICROSCOPY2.431528
67UVX|1|aA. baumannii 70S ribosome-Streptothricin-F complexELECTRON MICROSCOPY2.351528
77UW1|1|aA. baumannii 70S ribosome-Streptothricin-D complexELECTRON MICROSCOPY2.211528
87UVV|1|aA. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNAELECTRON MICROSCOPY2.51528
97UVY|1|aA. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNAELECTRON MICROSCOPY2.391528

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

7M4Y|1|a:7M4Y|1|a = 07M4Y|1|a:7UVW|1|a = 0.03047M4Y|1|a:7UVZ|1|a = 0.03457M4Y|1|a:7RYG|1|a = 0.03807M4Y|1|a:7RYH|1|a = 0.05357M4Y|1|a:7UVX|1|a = 0.04127M4Y|1|a:7UW1|1|a = 0.09297M4Y|1|a:7UVV|1|a = 0.11787M4Y|1|a:7UVY|1|a = 0.12607UVW|1|a:7M4Y|1|a = 0.03047UVW|1|a:7UVW|1|a = 07UVW|1|a:7UVZ|1|a = 0.02377UVW|1|a:7RYG|1|a = 0.03087UVW|1|a:7RYH|1|a = 0.05647UVW|1|a:7UVX|1|a = 0.04417UVW|1|a:7UW1|1|a = 0.09947UVW|1|a:7UVV|1|a = 0.12517UVW|1|a:7UVY|1|a = 0.13267UVZ|1|a:7M4Y|1|a = 0.03457UVZ|1|a:7UVW|1|a = 0.02377UVZ|1|a:7UVZ|1|a = 07UVZ|1|a:7RYG|1|a = 0.03467UVZ|1|a:7RYH|1|a = 0.04617UVZ|1|a:7UVX|1|a = 0.03117UVZ|1|a:7UW1|1|a = 0.08207UVZ|1|a:7UVV|1|a = 0.10767UVZ|1|a:7UVY|1|a = 0.11447RYG|1|a:7M4Y|1|a = 0.03807RYG|1|a:7UVW|1|a = 0.03087RYG|1|a:7UVZ|1|a = 0.03467RYG|1|a:7RYG|1|a = 07RYG|1|a:7RYH|1|a = 0.04147RYG|1|a:7UVX|1|a = 0.04537RYG|1|a:7UW1|1|a = 0.09717RYG|1|a:7UVV|1|a = 0.12087RYG|1|a:7UVY|1|a = 0.12937RYH|1|a:7M4Y|1|a = 0.05357RYH|1|a:7UVW|1|a = 0.05647RYH|1|a:7UVZ|1|a = 0.04617RYH|1|a:7RYG|1|a = 0.04147RYH|1|a:7RYH|1|a = 07RYH|1|a:7UVX|1|a = 0.03257RYH|1|a:7UW1|1|a = 0.06787RYH|1|a:7UVV|1|a = 0.08947RYH|1|a:7UVY|1|a = 0.09847UVX|1|a:7M4Y|1|a = 0.04127UVX|1|a:7UVW|1|a = 0.04417UVX|1|a:7UVZ|1|a = 0.03117UVX|1|a:7RYG|1|a = 0.04537UVX|1|a:7RYH|1|a = 0.03257UVX|1|a:7UVX|1|a = 07UVX|1|a:7UW1|1|a = 0.05897UVX|1|a:7UVV|1|a = 0.08427UVX|1|a:7UVY|1|a = 0.09277UW1|1|a:7M4Y|1|a = 0.09297UW1|1|a:7UVW|1|a = 0.09947UW1|1|a:7UVZ|1|a = 0.08207UW1|1|a:7RYG|1|a = 0.09717UW1|1|a:7RYH|1|a = 0.06787UW1|1|a:7UVX|1|a = 0.05897UW1|1|a:7UW1|1|a = 07UW1|1|a:7UVV|1|a = 0.03327UW1|1|a:7UVY|1|a = 0.03567UVV|1|a:7M4Y|1|a = 0.11787UVV|1|a:7UVW|1|a = 0.12517UVV|1|a:7UVZ|1|a = 0.10767UVV|1|a:7RYG|1|a = 0.12087UVV|1|a:7RYH|1|a = 0.08947UVV|1|a:7UVX|1|a = 0.08427UVV|1|a:7UW1|1|a = 0.03327UVV|1|a:7UVV|1|a = 07UVV|1|a:7UVY|1|a = 0.02077UVY|1|a:7M4Y|1|a = 0.12607UVY|1|a:7UVW|1|a = 0.13267UVY|1|a:7UVZ|1|a = 0.11447UVY|1|a:7RYG|1|a = 0.12937UVY|1|a:7RYH|1|a = 0.09847UVY|1|a:7UVX|1|a = 0.09277UVY|1|a:7UW1|1|a = 0.03567UVY|1|a:7UVV|1|a = 0.02077UVY|1|a:7UVY|1|a = 07M4Y|1|a7UVW|1|a7UVZ|1|a7RYG|1|a7RYH|1|a7UVX|1|a7UW1|1|a7UVV|1|a7UVY|1|aDiscrepancy0.000.020.040.060.080.100.12

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