Equivalence class NR_2.5_46995.40 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GLP|1|S2 (rep) | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 2023-04-19 |
| 2 | 8YOO|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline | Electron microscopy | 2 | 2024-07-10 |
| 3 | 8QOI|1|S2 | Small subunit ribosomal RNA | 18S rRNA (1740-MER) | Homo sapiens | Eukarya | RF01960 | Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA | Electron microscopy | 1.9 | 2024-06-12 |
| 4 | 8YOP|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline | Electron microscopy | 2.2 | 2024-07-10 |
| 5 | 8K2C|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with Tigecycline | Electron microscopy | 2.4 | 2024-07-10 |
| 6 | 8XSX|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | Electron microscopy | 2.4 | 2024-07-10 |
| 7 | 7R4X|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map | Electron microscopy | 2.15 | 2023-02-22 |
| 8 | 8G5Y|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | Electron microscopy | 2.29 | 2023-04-19 |
| 9 | 7XNY|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Homo sapiens | Eukarya | RF01960 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | Electron microscopy | 2.5 | 2023-04-05 |
| 10 | 8JDK|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.26 | 2023-12-06 |
| 11 | 8JDL|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | Electron microscopy | 2.42 | 2023-12-06 |
| 12 | 8JDJ|1|w | Small subunit ribosomal RNA | 18S ribosomal RNA | Homo sapiens | Eukarya | RF01960 | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | Electron microscopy | 2.5 | 2023-12-06 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8JDL|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) | ELECTRON MICROSCOPY | 2.42 | 1554 | |
| 2 | 8JDJ|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.5 | 1554 | |
| 3 | 8JDK|1|w | Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | ELECTRON MICROSCOPY | 2.26 | 1554 | |
| 4 | 7XNY|1|S2 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | ELECTRON MICROSCOPY | 2.5 | 1687 | |
| 5 | 8YOP|1|S2 | Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline | ELECTRON MICROSCOPY | 2.2 | 1740 | |
| 6 | 8K2C|1|S2 | Cryo-EM structure of the human 80S ribosome with Tigecycline | ELECTRON MICROSCOPY | 2.4 | 1740 | |
| 7 | 8YOO|1|S2 | Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline | ELECTRON MICROSCOPY | 2 | 1719 | |
| 8 | 8QOI|1|S2 | Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA | ELECTRON MICROSCOPY | 1.9 | 1648 | |
| 9 | 8G5Y|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | ELECTRON MICROSCOPY | 2.29 | 1595 | |
| 10 | 8GLP|1|S2 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 1587 | |
| 11 | 7R4X|1|2 | Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map | ELECTRON MICROSCOPY | 2.15 | 1580 | |
| 12 | 8XSX|1|S2 | Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 | ELECTRON MICROSCOPY | 2.4 | 1740 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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