RNA 3D Hub //

Equivalence class NR_2.5_46995.57 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18GLP|1|S2 (rep)Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)Electron microscopy1.6716722023-04-19
28QOI|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNAElectron microscopy1.917402024-06-12
38YOO|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with 100 um TigecyclineElectron microscopy217192024-07-10
49C3H|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.Electron microscopy216602024-12-04
58G5Y|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)Electron microscopy2.2916802023-04-19
68YOP|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with 4 um TigecyclineElectron microscopy2.217402024-07-10
79PBE|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human 80S ribosome (composite map)Electron microscopy2.1917402025-12-24
88K2C|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with TigecyclineElectron microscopy2.417402024-07-10
99P8B|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human eEF1A-A/T-P-E state 80S ribosomeElectron microscopy2.4817402025-12-24
109RPV|1|S3Small subunit ribosomal RNA18S rRNA of the stalled 80SHomo sapiensEukaryaRF01960Structure of the ZAK-bound human disomeElectron microscopy2.3516722025-12-10
117XNY|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsElectron microscopy2.517402023-04-05
128XSX|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2Electron microscopy2.417402024-07-10
139RPV|1|S2Small subunit ribosomal RNA18S rRNA of the collided 80SHomo sapiensEukaryaRF01960Structure of the ZAK-bound human disomeElectron microscopy2.3517562025-12-10
147R4X|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM reconstruction of the human 40S ribosomal subunit - Full mapElectron microscopy2.1516462023-02-22
158JDJ|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)Electron microscopy2.516342023-12-06
168JDL|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)Electron microscopy2.4216342023-12-06
178JDK|1|wSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)Electron microscopy2.2616342023-12-06
189AZC|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960In situ human 80S ribosome (Consensus map)Electron microscopy2.1917402025-04-30

Release history

Release4.19
Date2025-12-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18JDL|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)ELECTRON MICROSCOPY2.421634
28JDJ|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)ELECTRON MICROSCOPY2.51634
38JDK|1|wStructure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)ELECTRON MICROSCOPY2.261634
49RPV|1|S2Structure of the ZAK-bound human disomeELECTRON MICROSCOPY2.351756
59RPV|1|S3Structure of the ZAK-bound human disomeELECTRON MICROSCOPY2.351672
68GLP|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)ELECTRON MICROSCOPY1.671672
78G5Y|1|S2mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)ELECTRON MICROSCOPY2.291680
89C3H|1|S2Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.ELECTRON MICROSCOPY21660
97XNY|1|S2High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cellsELECTRON MICROSCOPY2.51740
108YOP|1|S2Cryo-EM structure of the human 80S ribosome with 4 um TigecyclineELECTRON MICROSCOPY2.21740
118K2C|1|S2Cryo-EM structure of the human 80S ribosome with TigecyclineELECTRON MICROSCOPY2.41740
128YOO|1|S2Cryo-EM structure of the human 80S ribosome with 100 um TigecyclineELECTRON MICROSCOPY21719
139PBE|1|S2In situ human 80S ribosome (composite map)ELECTRON MICROSCOPY2.191740
149P8B|1|S2In situ human eEF1A-A/T-P-E state 80S ribosomeELECTRON MICROSCOPY2.481740
159AZC|1|S2In situ human 80S ribosome (Consensus map)ELECTRON MICROSCOPY2.191740
168QOI|1|S2Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNAELECTRON MICROSCOPY1.91740
177R4X|1|2Cryo-EM reconstruction of the human 40S ribosomal subunit - Full mapELECTRON MICROSCOPY2.151646
188XSX|1|S2Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2ELECTRON MICROSCOPY2.41740

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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