#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|AA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
37K00|1|ASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
47S1H|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
57N1P|1|16Small subunit ribosomal RNA16S rRNA, mRNAEscherichia coli K-12BacteriaRF00177Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
67S1K|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
77S1J|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
87S1I|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
97S1G|1|CSmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
107O1A|1|AASmall subunit ribosomal RNARibosomal RNA 16SEscherichia coli K-12BacteriaRF00177Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
117PJS|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF00177Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20

Release history

Release3.2223.2233.2243.2253.2263.227
Date2022-03-162022-03-232022-03-302022-04-062022-04-132022-04-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_56726.82NR_2.5_56726.813.222(11) 4YBB|1|AA, 4YBB|1|BA, 7K00|1|A, 7N1P|1|16, 7O1A|1|AA, 7PJS|1|a, 7S1G|1|C, 7S1H|1|C, 7S1I|1|C, 7S1J|1|C, 7S1K|1|C(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_56726.82NR_2.5_56726.833.228(11) 4YBB|1|AA, 4YBB|1|BA, 7K00|1|A, 7N1P|1|16, 7O1A|1|AA, 7PJS|1|a, 7S1G|1|C, 7S1H|1|C, 7S1I|1|C, 7S1J|1|C, 7S1K|1|C(0) (0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17PJS|1|aStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.35660
27K00|1|AStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.981508
37N1P|1|16Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.331531
47O1A|1|AACryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.41523
57S1K|1|CCfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.421540
67S1I|1|CWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.481540
77S1G|1|Cwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.481540
87S1H|1|CWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.351540
97S1J|1|CWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.471540
104YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11522
114YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11523

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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