#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17SOS|1|B (rep)RNA (5'-R(*AP*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAAA RNAX-ray diffraction1.252022-08-03
26SCE|1|Bcyclic oligoadenylatesynthetic constructStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-ray diffraction1.832020-02-19
36XL1|1|CcA4synthetic constructcrystal structure of cA4-activated Cad1(D294N)X-ray diffraction1.952020-12-30
48Q42|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNAX-ray diffraction1.972023-11-22
56SCF|1|Icyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
66SCF|1|Kcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
76YUD|1|Kcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
86YUD|1|Ocyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
96SCF|1|Mcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
106YUD|1|Pcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
116SCF|1|Lcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-ray diffraction1.552019-10-30
126YUD|1|Mcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
136YUD|1|Qcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.842020-08-19
148Q44|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNAX-ray diffraction2.32023-11-22
158Q40|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4 activated Can2 in complex with a cleaved DNA substrateX-ray diffraction2.212023-11-22
168Q41|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNAX-ray diffraction2.382023-11-22
176WXQ|1|Ecyclic tetraadenylatesynthetic constructCrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-ray diffraction2.052021-11-17
188Q43|1|XCyclic tetraadenosine monophosphate (cA4)synthetic constructCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNAX-ray diffraction2.282023-11-22
198QJK|1|CCyclic tetraadenosine monophosphate (cA4)synthetic constructStructure of the cytoplasmic domain of csx23 from Vibrio cholera in complex with cyclic tetra-adenylate (cA4)X-ray diffraction1.7612024-08-07
208BAO|1|CCyclic tetra-adenylate (cA4)synthetic constructDysgonamonadaceae bacterium CRISPR ancillary nuclease 2X-ray diffraction2.062022-11-30
216O6X|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
227BDV|1|Fcyclic tetra-adenylatesynthetic constructStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-ray diffraction2.022021-03-03
238B0R|1|DRNA (5'-R(P*AP*AP*AP*A)-3')SulfurihydrogenibiumStructure of the CalpL/cA4 complexX-ray diffraction2.22022-11-16
247BDV|1|Hcyclic tetra-adenylatesynthetic constructStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-ray diffraction2.022021-03-03
256O6X|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-ray diffraction2.112019-07-31
266O7B|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
276O6V|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
287YGL|1|CRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediateX-ray diffraction2.52023-02-15
296O6V|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-ray diffraction2.352019-07-31
306O7B|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-ray diffraction2.42019-07-31
317Z55|1|CCCCyclic RNA cA4synthetic constructCrystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrateX-ray diffraction1.6642022-11-23

Release history

Release3.3553.3563.3573.358
Date2024-10-022024-10-092024-10-162024-10-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
26SCF|1|IA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
36WXQ|1|ECrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-RAY DIFFRACTION2.054
48Q42|1|XCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNAX-RAY DIFFRACTION1.974
58Q44|1|XCrystal structure of cA4-bound Can2 (E364R) in complex with oligo-T DNAX-RAY DIFFRACTION2.34
68Q41|1|XCrystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNAX-RAY DIFFRACTION2.384
78Q40|1|XCrystal structure of cA4 activated Can2 in complex with a cleaved DNA substrateX-RAY DIFFRACTION2.214
88Q43|1|XCrystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNAX-RAY DIFFRACTION2.284
97YGL|1|CCrystal Structure of the ring nuclease Sso2081 from Saccharolobus solfataricus in complex with A4>p cleavage intermediateX-RAY DIFFRACTION2.53
107BDV|1|FStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
118BAO|1|CDysgonamonadaceae bacterium CRISPR ancillary nuclease 2X-RAY DIFFRACTION2.064
128B0R|1|DStructure of the CalpL/cA4 complexX-RAY DIFFRACTION2.24
136YUD|1|KStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
146YUD|1|MStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
156YUD|1|QStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
166YUD|1|OStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
176YUD|1|PStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
186O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
196O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
207Z55|1|CCCCrystal Structure of the Ring Nuclease 0455 from Sulfolobus islandicus (Sis0455) in complex with its substrateX-RAY DIFFRACTION1.6644
216XL1|1|Ccrystal structure of cA4-activated Cad1(D294N)X-RAY DIFFRACTION1.954
227BDV|1|HStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
236O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
248QJK|1|CStructure of the cytoplasmic domain of csx23 from Vibrio cholera in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.7614
256SCE|1|BStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-RAY DIFFRACTION1.834
266O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
277SOS|1|BLaM domain of human LARP1 in complex with AAAA RNAX-RAY DIFFRACTION1.254
286O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
296SCF|1|LA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
306SCF|1|KA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
316SCF|1|MA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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