Equivalence class NR_2.5_65061.20 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GLP|1|L5+ 8GLP|1|L8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 2023-04-19 |
| 2 | 8A3D|1|A+ 8A3D|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | Electron microscopy | 1.67 | 2023-03-08 |
| 3 | 8G5Y|1|L5+ 8G5Y|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | Electron microscopy | 2.29 | 2023-04-19 |
| 4 | 7XNY|1|L1+ 7XNY|1|L3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | Electron microscopy | 2.5 | 2023-04-05 |
| 5 | 7OW7|1|A+ 7OW7|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | EIF6-bound large subunit of the human ribosome | Electron microscopy | 2.2 | 2022-10-05 |
| 6 | 8FLE|1|L3+ 8FLE|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State L2) | Electron microscopy | 2.48 | 2023-07-12 |
| 7 | 8FKW|1|L3+ 8FKW|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State D2) | Electron microscopy | 2.5 | 2023-07-12 |
| 8 | 8FKV|1|L3+ 8FKV|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State D1) | Electron microscopy | 2.47 | 2023-07-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_65061.20 | NR_2.5_65061.19 | 3.291 | (5) 7OW7|1|A+7OW7|1|C, 7XNY|1|L1+7XNY|1|L3, 8A3D|1|A+8A3D|1|C, 8G5Y|1|L5+8G5Y|1|L8, 8GLP|1|L5+8GLP|1|L8 | (3) 8FKV|1|L3+8FKV|1|L1, 8FKW|1|L3+8FKW|1|L1, 8FLE|1|L3+8FLE|1|L1 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_65061.20 | NR_2.5_65061.21 | 3.295 | (8) 7OW7|1|A+7OW7|1|C, 7XNY|1|L1+7XNY|1|L3, 8A3D|1|A+8A3D|1|C, 8FKV|1|L3+8FKV|1|L1, 8FKW|1|L3+8FKW|1|L1, 8FLE|1|L3+8FLE|1|L1, 8G5Y|1|L5+8G5Y|1|L8, 8GLP|1|L5+8GLP|1|L8 | (0) | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7XNY|1|L1+ 7XNY|1|L3 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | ELECTRON MICROSCOPY | 2.5 | 3686 | |
| 2 | 8GLP|1|L5+ 8GLP|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 3418 | |
| 3 | 8G5Y|1|L5+ 8G5Y|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | ELECTRON MICROSCOPY | 2.29 | 3594 | |
| 4 | 8A3D|1|A+ 8A3D|1|C | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | ELECTRON MICROSCOPY | 1.67 | 3190 | |
| 5 | 7OW7|1|A+ 7OW7|1|C | EIF6-bound large subunit of the human ribosome | ELECTRON MICROSCOPY | 2.2 | 3190 | |
| 6 | 8FLE|1|L3+ 8FLE|1|L1 | Human nuclear pre-60S ribosomal subunit (State L2) | ELECTRON MICROSCOPY | 2.48 | 3266 | |
| 7 | 8FKV|1|L3+ 8FKV|1|L1 | Human nucleolar pre-60S ribosomal subunit (State D1) | ELECTRON MICROSCOPY | 2.47 | 2213 | |
| 8 | 8FKW|1|L3+ 8FKW|1|L1 | Human nucleolar pre-60S ribosomal subunit (State D2) | ELECTRON MICROSCOPY | 2.5 | 2277 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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