NR_2.5_65795.86

Members (58)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	9NO7\|1\|a (rep)	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution	Electron microscopy	2.13	1487	2025-06-18
2	8VTW\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-ray diffraction	2.35	1500	2024-08-07
3	8VTW\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-ray diffraction	2.35	1504	2024-08-07
4	7RQB\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	1500	2022-01-26
5	4Y4O\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	1500	2015-03-18
6	8FC6\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-ray diffraction	2.35	1500	2023-07-26
7	9DFC\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1500	2024-11-20
8	8FC2\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-ray diffraction	2.5	1500	2023-07-12
9	8FC6\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-ray diffraction	2.35	1504	2023-07-26
10	4Y4O\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	1504	2015-03-18
11	7RQB\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	1504	2022-01-26
12	9D0J\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1500	2024-11-20
13	8FC1\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-ray diffraction	2.5	1500	2023-07-12
14	9DFC\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1503	2024-11-20
15	8FC2\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-ray diffraction	2.5	1504	2023-07-12
16	8G2A\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	1500	2023-12-27
17	8VTU\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	1500	2024-08-07
18	8G2A\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	1503	2023-12-27
19	8VTU\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	1503	2024-08-07
20	8VTX\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	1500	2024-08-07
21	8FC1\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-ray diffraction	2.5	1504	2023-07-12
22	7RQE\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	1500	2022-01-26
23	9D0I\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	1500	2025-08-27
24	9MTP\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-ray diffraction	2.4	1500	2025-06-18
25	9D0J\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1503	2024-11-20
26	9MTP\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-ray diffraction	2.4	1503	2025-06-18
27	7RQ8\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	1500	2021-10-13
28	8VTX\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	1503	2024-08-07
29	9D0H\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1500	2025-08-27
30	7RQE\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	1504	2022-01-26
31	9D0G\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1500	2025-08-27
32	7RQC\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	1500	2022-01-26
33	8FC4\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-ray diffraction	2.45	1500	2023-07-26
34	6XHW\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	1500	2020-12-23
35	8FC4\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-ray diffraction	2.45	1504	2023-07-26
36	7RQC\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	1504	2022-01-26
37	7RQ8\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	1503	2021-10-13
38	6XHV\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	1500	2020-12-23
39	9D0I\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	1503	2025-08-27
40	8CVK\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1500	2022-10-19
41	7RQD\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	1500	2022-01-26
42	6XHW\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	1503	2020-12-23
43	6XHV\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	1503	2020-12-23
44	7RQD\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	1504	2022-01-26
45	8CVK\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1503	2022-10-19
46	2VQE\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-ray diffraction	2.5	1513	2008-04-29
47	4Y4P\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	1500	2015-03-18
48	9D0G\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1503	2025-08-27
49	8CVJ\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	1500	2022-10-19
50	9D0H\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	1503	2025-08-27
51	7RQA\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	1500	2022-01-26
52	7RQA\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	1504	2022-01-26
53	4W2F\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	1497	2014-10-15
54	8CVL\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	1500	2022-10-19
55	4Y4P\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	1503	2015-03-18
56	8CVJ\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	1503	2022-10-19
57	8CVL\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	1503	2022-10-19
58	4W2F\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	1503	2014-10-15

Release history

Release	4.2	4.3	4.4	4.5	4.6	4.7	4.8	4.9	4.10	4.11	4.12	4.13	4.14	4.15	4.16	4.17	4.18	4.19	4.20	4.21	4.22	4.23	4.24	4.25	4.26	4.27
Date	2025-08-27	2025-09-03	2025-09-10	2025-09-17	2025-09-24	2025-10-01	2025-10-08	2025-10-15	2025-10-22	2025-10-29	2025-11-05	2025-11-12	2025-11-19	2025-11-26	2025-12-03	2025-12-10	2025-12-17	2025-12-24	2025-12-31	2026-01-07	2026-01-14	2026-01-21	2026-01-28	2026-02-04	2026-02-11	2026-02-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7RQA\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
2	4Y4O\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1500
3	8FC1\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
4	8FC4\|1\|1a	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-RAY DIFFRACTION	2.45	1500
5	8FC6\|1\|1a	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-RAY DIFFRACTION	2.35	1500
6	8VTW\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-RAY DIFFRACTION	2.35	1500
7	7RQB\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	1500
8	7RQC\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
9	7RQD\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
10	7RQE\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
11	8FC2\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
12	4W2F\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1497
13	8CVK\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
14	8CVJ\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
15	9D0I\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	1500
16	9D0H\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
17	4Y4P\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1500
18	7RQ8\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
19	6XHW\|1\|1a	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
20	8G2A\|1\|1a	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	1500
21	8VTU\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
22	9DFC\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
23	8CVL\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	1500
24	8VTX\|1\|1a	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
25	9D0J\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
26	9D0G\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1500
27	6XHV\|1\|1a	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
28	6XHV\|1\|2a	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	1503
29	4W2F\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1503
30	6XHW\|1\|2a	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
31	8CVJ\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1503
32	8CVK\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
33	9DFC\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
34	8VTU\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1503
35	8G2A\|1\|2a	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	1503
36	8VTX\|1\|2a	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1503
37	8CVL\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	1503
38	9D0J\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
39	9D0G\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
40	9D0H\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
41	9D0I\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	1503
42	4Y4P\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1503
43	7RQ8\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1503
44	9MTP\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-RAY DIFFRACTION	2.4	1500
45	9MTP\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-RAY DIFFRACTION	2.4	1503
46	7RQA\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	1504
47	4Y4O\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1504
48	8FC1\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	1504
49	8FC4\|1\|2a	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-RAY DIFFRACTION	2.45	1504
50	8FC6\|1\|2a	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-RAY DIFFRACTION	2.35	1504
51	8VTW\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-RAY DIFFRACTION	2.35	1504
52	7RQB\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	1504
53	7RQE\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	1504
54	7RQD\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	1504
55	7RQC\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	1504
56	8FC2\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	1504
57	9NO7\|1\|a	Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution	ELECTRON MICROSCOPY	2.13	1487
58	2VQE\|1\|A	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-RAY DIFFRACTION	2.5	1513

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_65795.86 Current

Release history

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