Equivalence class NR_2.5_68446.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9K8Z|1|A+ 9K8Z|1|B (rep) | DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in Space | X-ray diffraction | 1.4 | 18 | 2025-02-19 | |||
| 2 | 9K7R|1|A+ 9K7R|1|B | DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth | X-ray diffraction | 1.59 | 18 | 2025-02-19 | |||
| 3 | 4U6K|1|A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-ray diffraction | 1.5 | 9 | 2015-08-19 | |||
| 4 | 9KKZ|1|A+ 9KKZ|1|B | DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth (Na form) | X-ray diffraction | 1.5 | 18 | 2025-02-19 | |||
| 5 | 9KL1|1|A+ 9KL1|1|B | DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in space (Na form) | X-ray diffraction | 1.6 | 18 | 2025-02-19 | |||
| 6 | 4U6K|1|C | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-ray diffraction | 1.5 | 9 | 2015-08-19 | |||
| 7 | 4U6M|1|A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex obtained in the presence of Spermine | X-ray diffraction | 1.9 | 9 | 2015-08-19 | |||
| 8 | 4U6L|1|A | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | synthetic construct | Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2 | X-ray diffraction | 1.9 | 9 | 2015-08-19 | |||
| 9 | 479D|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION | X-ray diffraction | 1.9 | 9 | 2000-05-15 | ||||
| 10 | 2DQP|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines | X-ray diffraction | 2.1 | 9 | 2007-04-17 | ||||
| 11 | 2DQO|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 2.3 | 9 | 2007-04-17 | ||||
| 12 | 2DQQ|1|B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-ray diffraction | 2 | 9 | 2007-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 479D|1|B | CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION | X-RAY DIFFRACTION | 1.9 | 9 | |
| 2 | 4U6M|1|A | Crystal structure of DNA/RNA duplex obtained in the presence of Spermine | X-RAY DIFFRACTION | 1.9 | 9 | |
| 3 | 9KL1|1|A+ 9KL1|1|B | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in space (Na form) | X-RAY DIFFRACTION | 1.6 | 18 | |
| 4 | 9KKZ|1|A+ 9KKZ|1|B | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth (Na form) | X-RAY DIFFRACTION | 1.5 | 18 | |
| 5 | 9K8Z|1|A+ 9K8Z|1|B | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in Space | X-RAY DIFFRACTION | 1.4 | 18 | |
| 6 | 9K7R|1|A+ 9K7R|1|B | Crystal structure of DNA/RNA duplex obtained using the counter diffusion method on Earth | X-RAY DIFFRACTION | 1.59 | 18 | |
| 7 | 4U6L|1|A | Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2 | X-RAY DIFFRACTION | 1.9 | 9 | |
| 8 | 2DQO|1|B | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 2.3 | 9 | |
| 9 | 2DQP|1|B | Structural analyses of DNA:DNA and RNA:DNA duplexes containing 5-(N-aminohexyl)carbamoyl modified uridines | X-RAY DIFFRACTION | 2.1 | 9 | |
| 10 | 2DQQ|1|B | Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine | X-RAY DIFFRACTION | 2 | 9 | |
| 11 | 4U6K|1|C | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-RAY DIFFRACTION | 1.5 | 9 | |
| 12 | 4U6K|1|A | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | X-RAY DIFFRACTION | 1.5 | 9 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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