Equivalence class NR_2.5_69141.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9CBX|1|N (rep) | Group I catalytic intron | RNA (387-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Tetrahymena ribozyme with automatically identified water and magnesium ions | Electron microscopy | 2.2 | 387 | 2024-11-20 |
| 2 | 9CBU|1|N | Group I catalytic intron | RNA (387-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Tetrahymena ribozyme with consensus water and magnesium ions | Electron microscopy | 2.2 | 387 | 2024-11-20 |
| 3 | 9CBY|1|N | Group I catalytic intron | RNA (387-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Tetrahymena ribozyme with automatically identified water and magnesium ions | Electron microscopy | 2.3 | 387 | 2024-11-20 |
| 4 | 9CBW|1|N | Group I catalytic intron | RNA (387-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Tetrahymena ribozyme with consensus water and magnesium ions | Electron microscopy | 2.3 | 387 | 2024-11-20 |
| 5 | 7YGA|1|N | Group I catalytic intron | RNA (393-MER), RNA (5'-R(*CP*CP*CP*UP*CP*U)-3'), RNA (5'-R(*UP*CP*GP*(SSU)P*AP*AP*CP*C)-3') | Tetrahymena | Eukarya | RF00028 | Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing | Electron microscopy | 2.35 | 393 | 2023-03-29 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9CBW|1|N | Tetrahymena ribozyme with consensus water and magnesium ions | ELECTRON MICROSCOPY | 2.3 | 387 | |
| 2 | 9CBY|1|N | Tetrahymena ribozyme with automatically identified water and magnesium ions | ELECTRON MICROSCOPY | 2.3 | 387 | |
| 3 | 9CBX|1|N | Tetrahymena ribozyme with automatically identified water and magnesium ions | ELECTRON MICROSCOPY | 2.2 | 387 | |
| 4 | 9CBU|1|N | Tetrahymena ribozyme with consensus water and magnesium ions | ELECTRON MICROSCOPY | 2.2 | 387 | |
| 5 | 7YGA|1|N | Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the second-step self-splicing | ELECTRON MICROSCOPY | 2.35 | 393 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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