Equivalence class NR_2.5_69813.19 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9TQA|1|Y (rep) | Transfer RNA | A-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA | Electron microscopy | 2.06 | 72 | 2026-05-20 |
| 2 | 28UI|1|Y | Transfer RNA | A-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA | Electron microscopy | 2.1 | 72 | 2026-05-20 |
| 3 | 9TMI|1|Y | Transfer RNA | A-site Val-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with A- and P-site tRNA | Electron microscopy | 2.08 | 72 | 2026-05-20 |
| 4 | 28UM|1|Y | Transfer RNA | A-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA | Electron microscopy | 2.15 | 72 | 2026-05-20 |
| 5 | 28UK|1|Y | Transfer RNA | A-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA | Electron microscopy | 2.24 | 72 | 2026-05-20 |
| 6 | 7EQJ|1|B | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | crystal structure of E. coli Valine tRNA | X-ray diffraction | 2.043 | 75 | 2022-01-19 |
| 7 | 7EQJ|1|A | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | crystal structure of E. coli Valine tRNA | X-ray diffraction | 2.043 | 76 | 2022-01-19 |
| 8 | 9B51|1|AW | Transfer RNA | tRNA-Val | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418) | Electron microscopy | 2.4 | 74 | 2025-08-27 |
| 9 | 28UH|1|Y | Transfer RNA | A/P-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA | Electron microscopy | 2.06 | 72 | 2026-05-20 |
| 10 | 28UJ|1|Y | Transfer RNA | A/P-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA | Electron microscopy | 2.16 | 72 | 2026-05-20 |
| 11 | 9B4Z|1|AW | Transfer RNA | tRNA-Val | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) | Electron microscopy | 2.2 | 74 | 2025-08-27 |
| 12 | 9TNL|1|Y | Transfer RNA | A/P-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome with A/P- and P/E-site tRNA | Electron microscopy | 2.11 | 72 | 2026-05-20 |
| 13 | 9B4Z|1|AY | Transfer RNA | tRNA-Val | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) | Electron microscopy | 2.2 | 74 | 2025-08-27 |
| 14 | 7K00|1|Y | Transfer RNA | A-site tRNA-val, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 74 | 2020-09-23 |
| 15 | 9B51|1|AY | Transfer RNA | tRNA-Val | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418) | Electron microscopy | 2.4 | 74 | 2025-08-27 |
| 16 | 28UL|1|Y | Transfer RNA | A/P-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA | Electron microscopy | 2.5 | 72 | 2026-05-20 |
| 17 | 28UN|1|Y | Transfer RNA | A/P-site Val-tRNA^Val, mRNA | Escherichia coli | Bacteria | RF00005 | E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA | Electron microscopy | 2.48 | 72 | 2026-05-20 |
Release history
| Release | 4.40 |
|---|---|
| Date | 2026-05-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 28UL|1|Y | E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA | ELECTRON MICROSCOPY | 2.5 | 72 | |
| 2 | 28UN|1|Y | E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA | ELECTRON MICROSCOPY | 2.48 | 72 | |
| 3 | 9TNL|1|Y | E. coli 70S ribosome with A/P- and P/E-site tRNA | ELECTRON MICROSCOPY | 2.11 | 72 | |
| 4 | 28UH|1|Y | E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA | ELECTRON MICROSCOPY | 2.06 | 72 | |
| 5 | 28UJ|1|Y | E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA | ELECTRON MICROSCOPY | 2.16 | 72 | |
| 6 | 7K00|1|Y | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | ELECTRON MICROSCOPY | 1.98 | 74 | |
| 7 | 9TMI|1|Y | E. coli 70S ribosome with A- and P-site tRNA | ELECTRON MICROSCOPY | 2.08 | 72 | |
| 8 | 28UM|1|Y | E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA | ELECTRON MICROSCOPY | 2.15 | 72 | |
| 9 | 28UK|1|Y | E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA | ELECTRON MICROSCOPY | 2.24 | 72 | |
| 10 | 28UI|1|Y | E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA | ELECTRON MICROSCOPY | 2.1 | 72 | |
| 11 | 9TQA|1|Y | E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA | ELECTRON MICROSCOPY | 2.06 | 72 | |
| 12 | 9B51|1|AW | E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418) | ELECTRON MICROSCOPY | 2.4 | 74 | |
| 13 | 9B4Z|1|AW | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) | ELECTRON MICROSCOPY | 2.2 | 74 | |
| 14 | 9B51|1|AY | E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418) | ELECTRON MICROSCOPY | 2.4 | 74 | |
| 15 | 9B4Z|1|AY | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) | ELECTRON MICROSCOPY | 2.2 | 74 | |
| 16 | 7EQJ|1|B | crystal structure of E. coli Valine tRNA | X-RAY DIFFRACTION | 2.043 | 75 | |
| 17 | 7EQJ|1|A | crystal structure of E. coli Valine tRNA | X-RAY DIFFRACTION | 2.043 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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