#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15ZEG|1|A+ 5ZEG|1|B (rep)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-ray diffraction2.4462018-03-21
23TD0|1|A+ 3TD0|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-ray diffraction1.6442011-12-07
32PWT|1|A+ 2PWT|1|B22-mer of the ribosomal decoding siteCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-ray diffraction1.8422007-09-18
44P3T|1|A+ 4P3T|1|B5'-D(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructCrystal structure of the bacterial A1408C-mutant ribosomal decoding siteX-ray diffraction1.6462016-05-04
53TD1|1|A+ 3TD1|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-ray diffraction2.1452011-12-07
64K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')LeishmaniaCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-ray diffraction2.5422013-07-31
75ZEI|1|A+ 5ZEI|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.1432018-03-21
84P3S|1|A+ 4P3S|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructCrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-ray diffraction2.3432016-05-04
92ET5|1|A+ 2ET5|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Ribostamycin and the 16S-RRNA A-SiteX-ray diffraction2.2422005-12-13
105Z1I|1|ARNA (5'-R(P*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction1.9212018-05-30
114P43|1|A+ 4P43|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*UP*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'synthetic constructCrystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 2)X-ray diffraction2442016-05-04
121MWL|1|A+ 1MWL|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-ray diffraction2.4422003-02-18
132ET4|1|A+ 2ET4|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Neomycin B and the 16S-RRNA A-SiteX-ray diffraction2.4422005-12-13
145ZEG|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-ray diffraction2.4232018-03-21
155Z1H|1|A+ 5Z1H|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-ray diffraction2.4422018-05-30
162ESJ|1|A+ 2ESJ|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Lividomycin A and the 16S-Rrna A SiteX-ray diffraction2.2422005-12-20
173WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-ray diffraction2.3422014-11-05
184F8U|1|A+ 4F8U|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-ray diffraction2432012-08-15
195Z71|1|A+ 5Z71|1|BRNA (5'-R(P*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')synthetic constructCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)X-ray diffraction2.5412019-01-30
201J7T|1|A+ 1J7T|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-ray diffraction2.5422002-05-18

Release history

Release4.0
Date2025-08-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
14K32|1|A+ 4K32|1|BCrystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.542
25Z71|1|A+ 5Z71|1|BCrystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418 (P21212 form)X-RAY DIFFRACTION2.541
34F8U|1|A+ 4F8U|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION243
41MWL|1|A+ 1MWL|1|BCrystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.442
51J7T|1|A+ 1J7T|1|BComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.542
62ET4|1|A+ 2ET4|1|BComplex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.442
72ET5|1|A+ 2ET5|1|BComplex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.242
82ESJ|1|A+ 2ESJ|1|BComplex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.242
92PWT|1|A+ 2PWT|1|BCrystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA groupX-RAY DIFFRACTION1.842
105Z1H|1|A+ 5Z1H|1|BCrystal structure of the bacterial ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION2.442
113WRU|1|A+ 3WRU|1|BCrystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.342
123TD1|1|A+ 3TD1|1|BCrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.145
135Z1I|1|ACrystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-fluoro sisomicinX-RAY DIFFRACTION1.921
145ZEI|1|A+ 5ZEI|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.143
154P3S|1|A+ 4P3S|1|BCrystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.343
165ZEG|1|CCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.423
173TD0|1|A+ 3TD0|1|BCrystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-RAY DIFFRACTION1.644
184P43|1|A+ 4P43|1|BCrystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 2)X-RAY DIFFRACTION244
195ZEG|1|A+ 5ZEG|1|BCrystal structure of the bacterial A1408me1A-mutant ribosomal decoding siteX-RAY DIFFRACTION2.446
204P3T|1|A+ 4P3T|1|BCrystal structure of the bacterial A1408C-mutant ribosomal decoding siteX-RAY DIFFRACTION1.646

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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