NR_2.5_83717.162

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8B0X\|1\|a (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli B	Bacteria	RF02541	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	2748	2022-11-30
2	9Q87\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli B	Bacteria	RF02541	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	Electron microscopy	1.55	2906	2025-05-14
3	9GHE\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	Electron microscopy	1.87	2782	2025-03-26
4	8CGV\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Tiamulin bound to the 50S subunit	Electron microscopy	1.66	2687	2023-08-02
5	8CGK\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Lincomycin and Avilamycin bound to the 50S subunit	Electron microscopy	1.64	2699	2023-07-19
6	8CGD\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Clindamycin bound to the 50S subunit	Electron microscopy	1.98	2748	2023-07-26
7	9D89\|1\|D	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	Electron microscopy	1.95	2728	2025-01-22
8	8CEU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Retapamulin and Capreomycin bound to the 50S subunit	Electron microscopy	1.83	2753	2023-07-26
9	8FTO\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with an improved MS2 tag inserted in H98	Electron microscopy	1.85	2767	2023-08-02
10	8G6Y\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	Electron microscopy	2.09	2753	2023-04-05
11	8BIM\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	Electron microscopy	2.04	2758	2023-08-16
12	8BIL\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	Electron microscopy	2.04	2758	2023-08-16
13	7K00\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2753	2020-09-23
14	8CAM\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Evernimicin bound to the 50S subunit	Electron microscopy	1.86	2690	2023-07-26
15	9GHB\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	Electron microscopy	2.21	2782	2025-03-26
16	9GHA\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	Electron microscopy	2.24	2782	2025-03-26
17	8G6W\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	2753	2023-04-05
18	8EMM\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	2753	2023-05-31
19	8BGE\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.11	2758	2023-08-16
20	8G6X\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.31	2753	2023-03-22
21	8BHL\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.21	2758	2023-08-16
22	9GHD\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	Electron microscopy	2.41	2782	2025-03-26
23	8HSP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	Electron microscopy	2.32	2753	2024-04-03
24	9GHF\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	Electron microscopy	2.4	2782	2025-03-26
25	9N2B\|1\|23	Large subunit ribosomal RNA	23S ribosomal RNA (rRNA) from the rrnB operon	Escherichia coli K-12	Bacteria	RF02541	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	Electron microscopy	2.2	2767	2025-03-19
26	8E30\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin A analog 3142	Electron microscopy	1.91	2898	2023-06-28
27	8BF7\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	2758	2023-08-16
28	8YUO\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	Electron microscopy	2.25	2753	2024-11-06
29	8BHP\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.37	2758	2023-08-16
30	8YUP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	Electron microscopy	2.39	2753	2024-11-06
31	8YUQ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	Electron microscopy	2.41	2753	2024-11-06
32	8HTZ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	Electron microscopy	2.4	2753	2024-04-03
33	9B4Z\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	2897	2025-08-27
34	8IFB\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Dibekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.43	2753	2024-02-14
35	8EIU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	2753	2023-02-01
36	8E49\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC31	Electron microscopy	2.05	2898	2023-06-28
37	9N2C\|1\|23	Large subunit ribosomal RNA	23S ribosomal RNA (rRNA) from the rrnB operon	Escherichia coli K-12	Bacteria	RF02541	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	Electron microscopy	2.4	2768	2025-03-19
38	8YUS\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	Electron microscopy	2.43	2753	2024-11-06
39	7Z20\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	2901	2022-08-10
40	7N1P\|1\|23	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2904	2021-07-14
41	7LVK\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	2898	2021-12-15
42	8E3O\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to solithromycin and VM1	Electron microscopy	1.99	2897	2023-06-28
43	7Y7G\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	Electron microscopy	2.34	2753	2023-10-25
44	8E46\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC21	Electron microscopy	2.32	2897	2023-06-28
45	9B51\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	2897	2025-08-27
46	8W51\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	Electron microscopy	2.4	2904	2024-08-28
47	8E42\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to tiamulin and azithromycin	Electron microscopy	2.29	2898	2023-06-28
48	8YUR\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	Electron microscopy	2.47	2753	2024-11-06
49	9H0L\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	Electron microscopy	2.49	2753	2025-05-28
50	8E41\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to tiamulin and VS1	Electron microscopy	2.13	2898	2023-06-28
51	8E47\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC26	Electron microscopy	2.32	2898	2023-06-28
52	7S1H\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2898	2021-11-17
53	8E45\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC17	Electron microscopy	2.3	2897	2023-06-28
54	8E43\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin A analog 3336	Electron microscopy	2.09	2897	2023-06-28
55	7S1I\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2898	2022-03-02
56	7Y7E\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.41	2753	2023-10-25
57	7S1G\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2898	2021-11-17
58	8RQ0\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	Electron microscopy	2.44	2900	2024-05-22
59	8RPZ\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	Electron microscopy	2.44	2900	2024-05-22
60	8RQ2\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	Electron microscopy	2.44	2900	2024-05-22
61	8E48\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC30	Electron microscopy	2.27	2898	2023-06-28
62	8E3M\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to L-linker solithromycin conjugate	Electron microscopy	2.25	2898	2023-06-28
63	7Y7F\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	Electron microscopy	2.43	2753	2023-10-25
64	8E33\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin analog SAB001	Electron microscopy	2.23	2897	2023-06-28
65	7S1K\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2898	2022-01-19
66	8E32\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	Electron microscopy	2.35	2898	2023-06-28
67	8E35\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound SAB002	Electron microscopy	2.27	2898	2023-06-28
68	8E36\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin A analog 3146	Electron microscopy	2.38	2897	2023-06-28
69	6PJ6\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2898	2020-01-22
70	6PCR\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	2897	2020-06-17
71	7ZP8\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	2901	2022-08-10
72	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2897	2015-03-18
73	8E3L\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to D-linker solithromycin conjugate	Electron microscopy	2.35	2897	2023-06-28
74	7BL4\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	2897	2021-05-12
75	6PC7\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	2897	2020-06-17
76	6PC6\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	2897	2020-06-17
77	8KIE\|1\|a	Large subunit ribosomal RNA	23S rRNA (partial)	Escherichia coli	Bacteria	RF02541	Structure of YchF with 50S ribosomal subunit (local map)	Electron microscopy	2.5	361	2024-08-28
78	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2898	2015-03-18
79	8CEP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Round2 30S head (no antibiotic)	Electron microscopy	2.04	31	2023-07-19
80	8CGU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Gentamicin bound to the 30S body	Electron microscopy	1.89	31	2023-07-26
81	8CGR\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Apramycin bound to the 30S body	Electron microscopy	2.12	30	2023-07-26
82	8CGJ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Streptomycin bound to the 30S body	Electron microscopy	1.79	31	2023-07-26
83	8AYE\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	2753	2023-03-01
84	8QOA\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Structure of SecM-stalled Escherichia coli 70S ribosome	Electron microscopy	2	2753	2024-03-20
85	7QQ3\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	Electron microscopy	2.1	2898	2023-01-18
86	8ANA\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	Electron microscopy	2.1	2733	2023-03-08
87	8QBT\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	E. coli ApdP-stalled ribosomal complex	Electron microscopy	2.2	2841	2024-03-20
88	8R6C\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	Electron microscopy	2.2	2753	2024-07-24
89	6XZ7\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	2897	2020-07-22
90	7PJS\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2903	2021-10-20
91	8AKN\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	2753	2023-03-08
92	7O1A\|1\|BA	Large subunit ribosomal RNA	Ribosomal RNA 23S	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2897	2021-09-01
93	7S1J\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2898	2022-03-02
94	9FBV\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	70S Escherichia coli ribosome with P-site initiatior tRNA.	Electron microscopy	2.4	2753	2024-06-26
95	8R8M\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	Electron microscopy	2.4	2738	2024-07-24

Release history

Release	4.7
Date	2025-10-01

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	8KIE\|1\|a	Structure of YchF with 50S ribosomal subunit (local map)	ELECTRON MICROSCOPY	2.5	361
2	8W51\|1\|A	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	ELECTRON MICROSCOPY	2.4	2904
3	7PJS\|1\|A	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	2903
4	8CGD\|1\|a	Clindamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.98	2748
5	9N2B\|1\|23	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	ELECTRON MICROSCOPY	2.2	2767
6	7Z20\|1\|b	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	2901
7	7ZP8\|1\|b	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	2901
8	7QQ3\|1\|I	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	ELECTRON MICROSCOPY	2.1	2898
9	7BL4\|1\|A	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	2897
10	8RQ0\|1\|A	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	ELECTRON MICROSCOPY	2.44	2900
11	8RQ2\|1\|A	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	ELECTRON MICROSCOPY	2.44	2900
12	8RPZ\|1\|A	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	ELECTRON MICROSCOPY	2.44	2900
13	7O1A\|1\|BA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	2897
14	9B51\|1\|BA	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	2897
15	9B4Z\|1\|BA	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	2897
16	8QBT\|1\|A	E. coli ApdP-stalled ribosomal complex	ELECTRON MICROSCOPY	2.2	2841
17	8R6C\|1\|a	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	ELECTRON MICROSCOPY	2.2	2753
18	9FBV\|1\|a	70S Escherichia coli ribosome with P-site initiatior tRNA.	ELECTRON MICROSCOPY	2.4	2753
19	8CEU\|1\|a	Retapamulin and Capreomycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.83	2753
20	8CGV\|1\|a	Tiamulin bound to the 50S subunit	ELECTRON MICROSCOPY	1.66	2687
21	8ANA\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	ELECTRON MICROSCOPY	2.1	2733
22	8AKN\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	2753
23	9GHD\|1\|a	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	ELECTRON MICROSCOPY	2.41	2782
24	9GHF\|1\|a	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	ELECTRON MICROSCOPY	2.4	2782
25	8CGK\|1\|a	Lincomycin and Avilamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.64	2699
26	9GHE\|1\|a	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	ELECTRON MICROSCOPY	1.87	2782
27	9GHB\|1\|a	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	ELECTRON MICROSCOPY	2.21	2782
28	9GHA\|1\|a	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	ELECTRON MICROSCOPY	2.24	2782
29	8CAM\|1\|a	Evernimicin bound to the 50S subunit	ELECTRON MICROSCOPY	1.86	2690
30	6XZ7\|1\|A	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	2897
31	8QOA\|1\|a	Structure of SecM-stalled Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2	2753
32	8EMM\|1\|a	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	2753
33	8G6X\|1\|a	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.31	2753
34	8G6Y\|1\|a	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.09	2753
35	8G6W\|1\|a	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	2753
36	7K00\|1\|a	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	2753
37	8AYE\|1\|a	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	2753
38	8IFB\|1\|a	Dibekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.43	2753
39	8EIU\|1\|a	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	2753
40	8FTO\|1\|a	E. coli 70S ribosome with an improved MS2 tag inserted in H98	ELECTRON MICROSCOPY	1.85	2767
41	7N1P\|1\|23	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	2904
42	9N2C\|1\|23	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	ELECTRON MICROSCOPY	2.4	2768
43	8B0X\|1\|a	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	2748
44	9Q87\|1\|a	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	ELECTRON MICROSCOPY	1.55	2906
45	9H0L\|1\|a	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	ELECTRON MICROSCOPY	2.49	2753
46	8HTZ\|1\|a	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	ELECTRON MICROSCOPY	2.4	2753
47	8HSP\|1\|a	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	ELECTRON MICROSCOPY	2.32	2753
48	8YUO\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	ELECTRON MICROSCOPY	2.25	2753
49	8YUS\|1\|a	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	ELECTRON MICROSCOPY	2.43	2753
50	8YUR\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	ELECTRON MICROSCOPY	2.47	2753
51	8YUQ\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	ELECTRON MICROSCOPY	2.41	2753
52	8YUP\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	ELECTRON MICROSCOPY	2.39	2753
53	7Y7G\|1\|a	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	ELECTRON MICROSCOPY	2.34	2753
54	7Y7E\|1\|a	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.41	2753
55	7Y7F\|1\|a	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	ELECTRON MICROSCOPY	2.43	2753
56	7S1J\|1\|I	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	2898
57	7S1I\|1\|I	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	2898
58	7S1G\|1\|I	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	2898
59	7S1H\|1\|I	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	2898
60	7S1K\|1\|I	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	2898
61	9D89\|1\|D	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	ELECTRON MICROSCOPY	1.95	2728
62	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2897
63	8R8M\|1\|a	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	ELECTRON MICROSCOPY	2.4	2738
64	6PJ6\|1\|I	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	2898
65	7LVK\|1\|I	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	2898
66	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2898
67	8E3O\|1\|I	E. coli 50S ribosome bound to solithromycin and VM1	ELECTRON MICROSCOPY	1.99	2897
68	8E42\|1\|I	E. coli 50S ribosome bound to tiamulin and azithromycin	ELECTRON MICROSCOPY	2.29	2898
69	8E36\|1\|I	E. coli 50S ribosome bound to compound streptogramin A analog 3146	ELECTRON MICROSCOPY	2.38	2897
70	8E33\|1\|I	E. coli 50S ribosome bound to compound streptogramin analog SAB001	ELECTRON MICROSCOPY	2.23	2897
71	8E30\|1\|I	E. coli 50S ribosome bound to compound streptogramin A analog 3142	ELECTRON MICROSCOPY	1.91	2898
72	8E3M\|1\|I	E. coli 50S ribosome bound to L-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.25	2898
73	8E41\|1\|I	E. coli 50S ribosome bound to tiamulin and VS1	ELECTRON MICROSCOPY	2.13	2898
74	8E43\|1\|I	E. coli 50S ribosome bound to compound streptogramin A analog 3336	ELECTRON MICROSCOPY	2.09	2897
75	6PCR\|1\|I	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	2897
76	6PC6\|1\|I	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	2897
77	6PC7\|1\|I	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	2897
78	8E49\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC31	ELECTRON MICROSCOPY	2.05	2898
79	8E45\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC17	ELECTRON MICROSCOPY	2.3	2897
80	8E46\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC21	ELECTRON MICROSCOPY	2.32	2897
81	8E32\|1\|I	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	ELECTRON MICROSCOPY	2.35	2898
82	8E3L\|1\|I	E. coli 50S ribosome bound to D-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.35	2897
83	8E48\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC30	ELECTRON MICROSCOPY	2.27	2898
84	8E47\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC26	ELECTRON MICROSCOPY	2.32	2898
85	8E35\|1\|I	E. coli 50S ribosome bound to compound SAB002	ELECTRON MICROSCOPY	2.27	2898
86	8BHP\|1\|0	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.37	2758
87	8BIM\|1\|0	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	ELECTRON MICROSCOPY	2.04	2758
88	8BIL\|1\|0	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	ELECTRON MICROSCOPY	2.04	2758
89	8BGE\|1\|0	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.11	2758
90	8BHL\|1\|0	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.21	2758
91	8BF7\|1\|0	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	2758
92	8CGU\|1\|a	Gentamicin bound to the 30S body	ELECTRON MICROSCOPY	1.89	31
93	8CGJ\|1\|a	Streptomycin bound to the 30S body	ELECTRON MICROSCOPY	1.79	31
94	8CEP\|1\|a	Round2 30S head (no antibiotic)	ELECTRON MICROSCOPY	2.04	31
95	8CGR\|1\|a	Apramycin bound to the 30S body	ELECTRON MICROSCOPY	2.12	30

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_83717.162 Current

Release history

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