NR_2.5_83717.189

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8B0X\|1\|a (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli B	Bacteria	RF02541	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	2748	2022-11-30
2	9Q87\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli B	Bacteria	RF02541	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	Electron microscopy	1.55	2906	2025-05-14
3	9GHE\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	Electron microscopy	1.87	2782	2025-03-26
4	8CGV\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Tiamulin bound to the 50S subunit	Electron microscopy	1.66	2687	2023-08-02
5	8CGK\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Lincomycin and Avilamycin bound to the 50S subunit	Electron microscopy	1.64	2699	2023-07-19
6	8CGD\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Clindamycin bound to the 50S subunit	Electron microscopy	1.98	2748	2023-07-26
7	9D89\|1\|D	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	Electron microscopy	1.95	2728	2025-01-22
8	8CEU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Retapamulin and Capreomycin bound to the 50S subunit	Electron microscopy	1.83	2753	2023-07-26
9	8FTO\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with an improved MS2 tag inserted in H98	Electron microscopy	1.85	2767	2023-08-02
10	8G6Y\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	Electron microscopy	2.09	2753	2023-04-05
11	9T6M\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain	Electron microscopy	1.87	2851	2026-03-18
12	9T0Y\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain	Electron microscopy	1.87	2853	2026-03-18
13	8BIM\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	Electron microscopy	2.04	2758	2023-08-16
14	9TQA\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA	Electron microscopy	2.06	2757	2026-05-20
15	28UH\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	Electron microscopy	2.06	2757	2026-05-20
16	8BIL\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	Electron microscopy	2.04	2758	2023-08-16
17	7K00\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2753	2020-09-23
18	8CAM\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Evernimicin bound to the 50S subunit	Electron microscopy	1.86	2690	2023-07-26
19	9TMI\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with A- and P-site tRNA	Electron microscopy	2.08	2757	2026-05-20
20	9GHB\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	Electron microscopy	2.21	2782	2025-03-26
21	9GHA\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	Electron microscopy	2.24	2782	2025-03-26
22	28UI\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA	Electron microscopy	2.1	2757	2026-05-20
23	8G6W\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	2753	2023-04-05
24	9TNL\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with A/P- and P/E-site tRNA	Electron microscopy	2.11	2757	2026-05-20
25	9SYH\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from deltaRlmE strain	Electron microscopy	1.89	2857	2026-03-18
26	8EMM\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	Electron microscopy	2.1	2753	2023-05-31
27	28UJ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	Electron microscopy	2.16	2757	2026-05-20
28	28UM\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA	Electron microscopy	2.15	2757	2026-05-20
29	8BGE\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.11	2758	2023-08-16
30	9Q3R\|1\|A	Large subunit ribosomal RNA	23S Ribosomal RNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution	Electron microscopy	1.99	2899	2026-08-26
31	9Q3Q\|1\|A	Large subunit ribosomal RNA	23S Ribosomal RNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution	Electron microscopy	2.01	2899	2026-08-26
32	9JPP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	Electron microscopy	2.26	2761	2026-03-11
33	28UK\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA	Electron microscopy	2.24	2757	2026-05-20
34	8G6X\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.31	2753	2023-03-22
35	9PIJ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to Minocycline	Electron microscopy	2.2	2753	2026-05-13
36	8BHL\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.21	2758	2023-08-16
37	30QZ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome with peptidyl-tRNA and Hsp15	Electron microscopy	2.23	2737	2026-05-27
38	9GHD\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	Electron microscopy	2.41	2782	2025-03-26
39	8HSP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	Electron microscopy	2.32	2753	2024-04-03
40	9GHF\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	Electron microscopy	2.4	2782	2025-03-26
41	9N2B\|1\|23	Large subunit ribosomal RNA	23S ribosomal RNA (rRNA) from the rrnB operon	Escherichia coli K-12	Bacteria	RF02541	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	Electron microscopy	2.2	2767	2025-03-19
42	8E30\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin A analog 3142	Electron microscopy	1.91	2898	2023-06-28
43	8BF7\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	Electron microscopy	2.33	2758	2023-08-16
44	8YUO\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	Electron microscopy	2.25	2753	2024-11-06
45	8BHP\|1\|0	Large subunit ribosomal RNA	23S rRNA RRLG-RRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	Electron microscopy	2.37	2758	2023-08-16
46	8YUP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	Electron microscopy	2.39	2753	2024-11-06
47	8YUQ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	Electron microscopy	2.41	2753	2024-11-06
48	8HTZ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	Electron microscopy	2.4	2753	2024-04-03
49	9B4Z\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	Electron microscopy	2.2	2897	2025-08-27
50	9PII\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to Sarecycline	Electron microscopy	2.4	2753	2026-05-13
51	9JPM\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	Electron microscopy	2.43	2761	2026-03-11
52	8IFB\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Dibekacin-bound E.coli 70S ribosome in the PURE system	Electron microscopy	2.43	2753	2024-02-14
53	9PIH\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to Doxycycline	Electron microscopy	2.4	2753	2026-05-13
54	8EIU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	2753	2023-02-01
55	9O2Y\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl	Electron microscopy	2.14	2753	2026-03-18
56	8E49\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC31	Electron microscopy	2.05	2898	2023-06-28
57	9N2C\|1\|23	Large subunit ribosomal RNA	23S ribosomal RNA (rRNA) from the rrnB operon	Escherichia coli K-12	Bacteria	RF02541	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	Electron microscopy	2.4	2768	2025-03-19
58	8YUS\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	Electron microscopy	2.43	2753	2024-11-06
59	28UN\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA	Electron microscopy	2.48	2757	2026-05-20
60	7Z20\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	2901	2022-08-10
61	9RBF\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC	Electron microscopy	2.44	2753	2026-06-03
62	28UL\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA	Electron microscopy	2.5	2757	2026-05-20
63	7N1P\|1\|23	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2904	2021-07-14
64	7LVK\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	2898	2021-12-15
65	8E3O\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to solithromycin and VM1	Electron microscopy	1.99	2897	2023-06-28
66	7Y7G\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	Electron microscopy	2.34	2753	2023-10-25
67	8E46\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC21	Electron microscopy	2.32	2897	2023-06-28
68	9B51\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	Electron microscopy	2.4	2897	2025-08-27
69	8W51\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	Electron microscopy	2.4	2904	2024-08-28
70	8E42\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to tiamulin and azithromycin	Electron microscopy	2.29	2898	2023-06-28
71	8YUR\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	Electron microscopy	2.47	2753	2024-11-06
72	9H0L\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	Electron microscopy	2.49	2753	2025-05-28
73	8E41\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to tiamulin and VS1	Electron microscopy	2.13	2898	2023-06-28
74	8E47\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC26	Electron microscopy	2.32	2898	2023-06-28
75	7S1H\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2898	2021-11-17
76	8E45\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC17	Electron microscopy	2.3	2897	2023-06-28
77	8E43\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin A analog 3336	Electron microscopy	2.09	2897	2023-06-28
78	9SLG\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BL21(DE3)	Bacteria	RF02541	Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre	Electron microscopy	2.16	2907	2026-04-22
79	7S1I\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2898	2022-03-02
80	9T2J\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 0	Electron microscopy	2.02	596	2026-03-18
81	9T2K\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 1	Electron microscopy	2.06	597	2026-03-18
82	9T2L\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 2	Electron microscopy	2.07	597	2026-03-18
83	7Y7E\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	Electron microscopy	2.41	2753	2023-10-25
84	9T2Q\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 7	Electron microscopy	2.08	597	2026-03-18
85	9T2O\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 5	Electron microscopy	2.07	597	2026-03-18
86	9T2N\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 4	Electron microscopy	2.06	597	2026-03-18
87	9T2S\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 9	Electron microscopy	2.07	597	2026-03-18
88	7S1G\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2898	2021-11-17
89	9T2M\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 3	Electron microscopy	2.06	597	2026-03-18
90	8RQ0\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	Electron microscopy	2.44	2900	2024-05-22
91	8RPZ\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	Electron microscopy	2.44	2900	2024-05-22
92	8RQ2\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	Electron microscopy	2.44	2900	2024-05-22
93	8E48\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to antibiotic analog SLC30	Electron microscopy	2.27	2898	2023-06-28
94	8E3M\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to L-linker solithromycin conjugate	Electron microscopy	2.25	2898	2023-06-28
95	9T2P\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 6	Electron microscopy	2.08	597	2026-03-18
96	7Y7F\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	Electron microscopy	2.43	2753	2023-10-25
97	9O2X\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl	Electron microscopy	2.29	2753	2026-03-18
98	8E33\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin analog SAB001	Electron microscopy	2.23	2897	2023-06-28
99	9HYM\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA	Electron microscopy	2.2	2901	2026-01-21
100	7S1K\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2898	2022-01-19
101	8E32\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	Electron microscopy	2.35	2898	2023-06-28
102	9T8O\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 4	Electron microscopy	2.19	587	2026-03-18
103	9T8K\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 0	Electron microscopy	2.18	590	2026-03-18
104	9T8M\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 2	Electron microscopy	2.2	589	2026-03-18
105	9T8P\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 5	Electron microscopy	2.22	589	2026-03-18
106	9T8R\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 7	Electron microscopy	2.22	585	2026-03-18
107	9T1J\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 9	Electron microscopy	2.23	596	2026-03-18
108	9T2R\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-9 strain, PTC class 8	Electron microscopy	2.22	597	2026-03-18
109	9T8L\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 1	Electron microscopy	2.21	592	2026-03-18
110	9T8S\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 8	Electron microscopy	2.22	590	2026-03-18
111	9T8T\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 9	Electron microscopy	2.23	587	2026-03-18
112	9T8Q\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 6	Electron microscopy	2.23	592	2026-03-18
113	8E35\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound SAB002	Electron microscopy	2.27	2898	2023-06-28
114	9T8N\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-10 strain, PTC class 3	Electron microscopy	2.22	592	2026-03-18
115	8E36\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound streptogramin A analog 3146	Electron microscopy	2.38	2897	2023-06-28
116	9T1G\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 6	Electron microscopy	2.29	596	2026-03-18
117	9T1E\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 4	Electron microscopy	2.28	596	2026-03-18
118	9RFW\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Manikomycin bound to the Escherichia coli 50S ribosomal subunit	Electron microscopy	2.4	2747	2026-05-27
119	9T1F\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 5	Electron microscopy	2.32	596	2026-03-18
120	6PJ6\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2898	2020-01-22
121	9T1I\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 8	Electron microscopy	2.3	596	2026-03-18
122	9T1H\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 7	Electron microscopy	2.33	596	2026-03-18
123	9T1A\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 1	Electron microscopy	2.39	596	2026-03-18
124	9T1B\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 2	Electron microscopy	2.32	596	2026-03-18
125	6PCR\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	2897	2020-06-17
126	7ZP8\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	2901	2022-08-10
127	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2897	2015-03-18
128	8E3L\|1\|I	Large subunit ribosomal RNA	50S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to D-linker solithromycin conjugate	Electron microscopy	2.35	2897	2023-06-28
129	9T19\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome from delta-RlmE strain, PTC class 0	Electron microscopy	2.41	596	2026-03-18
130	10QM\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E.coli 50S ribosomal subunit bound to compound 48a	Electron microscopy	2.49	2898	2026-06-10
131	9QQQ\|1\|a	Large subunit ribosomal RNA	E. coli 23S rRNA	Escherichia coli B	Bacteria	RF02541	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	Electron microscopy	2.26	2751	2026-02-18
132	9RJA\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Manikomycin bound to the Escherichia coli 70S ribosome	Electron microscopy	2.45	2747	2026-05-27
133	7BL4\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	2897	2021-05-12
134	6PC7\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	2897	2020-06-17
135	9HUQ\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA	Electron microscopy	2.49	2901	2026-01-14
136	6PC6\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	2897	2020-06-17
137	9HUS\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs	Electron microscopy	2.4	2901	2026-01-14
138	8KIE\|1\|a	Large subunit ribosomal RNA	23S rRNA (partial)	Escherichia coli	Bacteria	RF02541	Structure of YchF with 50S ribosomal subunit (local map)	Electron microscopy	2.5	361	2024-08-28
139	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2898	2015-03-18
140	8CEP\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Round2 30S head (no antibiotic)	Electron microscopy	2.04	31	2023-07-19
141	8CGU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Gentamicin bound to the 30S body	Electron microscopy	1.89	31	2023-07-26
142	8CGR\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Apramycin bound to the 30S body	Electron microscopy	2.12	30	2023-07-26
143	8CGJ\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Streptomycin bound to the 30S body	Electron microscopy	1.79	31	2023-07-26
144	8AYE\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	2753	2023-03-01
145	8QOA\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	Structure of SecM-stalled Escherichia coli 70S ribosome	Electron microscopy	2	2753	2024-03-20
146	7QQ3\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	Electron microscopy	2.1	2898	2023-01-18
147	8ANA\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	Electron microscopy	2.1	2733	2023-03-08
148	8QBT\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli BW25113	Bacteria	RF02541	E. coli ApdP-stalled ribosomal complex	Electron microscopy	2.2	2841	2024-03-20
149	8R6C\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	Electron microscopy	2.2	2753	2024-07-24
150	6XZ7\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	2897	2020-07-22
151	7PJS\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2903	2021-10-20
152	8AKN\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	2753	2023-03-08
153	7O1A\|1\|BA	Large subunit ribosomal RNA	Ribosomal RNA 23S	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2897	2021-09-01
154	7S1J\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2898	2022-03-02
155	9FBV\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	70S Escherichia coli ribosome with P-site initiatior tRNA.	Electron microscopy	2.4	2753	2024-06-26
156	8R8M\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	Electron microscopy	2.4	2738	2024-07-24

Release history

Release	4.59
Date	2026-09-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	8BF7\|1\|0	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site	ELECTRON MICROSCOPY	2.33	2758
2	8BHL\|1\|0	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.21	2758
3	8BGE\|1\|0	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.11	2758
4	8BIL\|1\|0	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.	ELECTRON MICROSCOPY	2.04	2758
5	8BIM\|1\|0	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site	ELECTRON MICROSCOPY	2.04	2758
6	8BHP\|1\|0	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation	ELECTRON MICROSCOPY	2.37	2758
7	8E35\|1\|I	E. coli 50S ribosome bound to compound SAB002	ELECTRON MICROSCOPY	2.27	2898
8	8E47\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC26	ELECTRON MICROSCOPY	2.32	2898
9	8E48\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC30	ELECTRON MICROSCOPY	2.27	2898
10	8E3L\|1\|I	E. coli 50S ribosome bound to D-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.35	2897
11	8E32\|1\|I	E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1	ELECTRON MICROSCOPY	2.35	2898
12	8E46\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC21	ELECTRON MICROSCOPY	2.32	2897
13	8E45\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC17	ELECTRON MICROSCOPY	2.3	2897
14	8E49\|1\|I	E. coli 50S ribosome bound to antibiotic analog SLC31	ELECTRON MICROSCOPY	2.05	2898
15	8E42\|1\|I	E. coli 50S ribosome bound to tiamulin and azithromycin	ELECTRON MICROSCOPY	2.29	2898
16	8E3M\|1\|I	E. coli 50S ribosome bound to L-linker solithromycin conjugate	ELECTRON MICROSCOPY	2.25	2898
17	8E41\|1\|I	E. coli 50S ribosome bound to tiamulin and VS1	ELECTRON MICROSCOPY	2.13	2898
18	8E30\|1\|I	E. coli 50S ribosome bound to compound streptogramin A analog 3142	ELECTRON MICROSCOPY	1.91	2898
19	8E33\|1\|I	E. coli 50S ribosome bound to compound streptogramin analog SAB001	ELECTRON MICROSCOPY	2.23	2897
20	8E36\|1\|I	E. coli 50S ribosome bound to compound streptogramin A analog 3146	ELECTRON MICROSCOPY	2.38	2897
21	8E43\|1\|I	E. coli 50S ribosome bound to compound streptogramin A analog 3336	ELECTRON MICROSCOPY	2.09	2897
22	6PCR\|1\|I	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	2897
23	6PC6\|1\|I	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	2897
24	6PC7\|1\|I	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	2897
25	8E3O\|1\|I	E. coli 50S ribosome bound to solithromycin and VM1	ELECTRON MICROSCOPY	1.99	2897
26	7LVK\|1\|I	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	2898
27	6PJ6\|1\|I	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	2898
28	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2898
29	10QM\|1\|I	E.coli 50S ribosomal subunit bound to compound 48a	ELECTRON MICROSCOPY	2.49	2898
30	8HTZ\|1\|a	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state	ELECTRON MICROSCOPY	2.4	2753
31	8HSP\|1\|a	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state	ELECTRON MICROSCOPY	2.32	2753
32	8YUO\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site	ELECTRON MICROSCOPY	2.25	2753
33	8YUS\|1\|a	E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA	ELECTRON MICROSCOPY	2.43	2753
34	8YUR\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA	ELECTRON MICROSCOPY	2.47	2753
35	8YUQ\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA	ELECTRON MICROSCOPY	2.41	2753
36	8YUP\|1\|a	E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA	ELECTRON MICROSCOPY	2.39	2753
37	9H0L\|1\|a	70S ribosome with cognate tRNASer3 bound to A-site AGC codon	ELECTRON MICROSCOPY	2.49	2753
38	9RJA\|1\|a	Manikomycin bound to the Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2.45	2747
39	9RFW\|1\|a	Manikomycin bound to the Escherichia coli 50S ribosomal subunit	ELECTRON MICROSCOPY	2.4	2747
40	7Y7F\|1\|a	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)	ELECTRON MICROSCOPY	2.43	2753
41	7Y7E\|1\|a	Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)	ELECTRON MICROSCOPY	2.41	2753
42	7Y7G\|1\|a	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)	ELECTRON MICROSCOPY	2.34	2753
43	9JPP\|1\|a	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)	ELECTRON MICROSCOPY	2.26	2761
44	9JPM\|1\|a	Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)	ELECTRON MICROSCOPY	2.43	2761
45	8B0X\|1\|a	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	2748
46	9Q87\|1\|a	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+	ELECTRON MICROSCOPY	1.55	2906
47	9PIH\|1\|a	E. coli 70S ribosome bound to Doxycycline	ELECTRON MICROSCOPY	2.4	2753
48	9PII\|1\|a	E. coli 70S ribosome bound to Sarecycline	ELECTRON MICROSCOPY	2.4	2753
49	9PIJ\|1\|a	E. coli 70S ribosome bound to Minocycline	ELECTRON MICROSCOPY	2.2	2753
50	9B4Z\|1\|BA	E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)	ELECTRON MICROSCOPY	2.2	2897
51	9B51\|1\|BA	E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)	ELECTRON MICROSCOPY	2.4	2897
52	7O1A\|1\|BA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	2897
53	9SLG\|1\|a	Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre	ELECTRON MICROSCOPY	2.16	2907
54	8RQ0\|1\|A	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II	ELECTRON MICROSCOPY	2.44	2900
55	8RQ2\|1\|A	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III	ELECTRON MICROSCOPY	2.44	2900
56	8RPZ\|1\|A	Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I	ELECTRON MICROSCOPY	2.44	2900
57	7BL4\|1\|A	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	2897
58	9TNL\|1\|a	E. coli 70S ribosome with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.11	2757
59	28UJ\|1\|a	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.16	2757
60	28UH\|1\|a	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.06	2757
61	28UL\|1\|a	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.5	2757
62	28UN\|1\|a	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA	ELECTRON MICROSCOPY	2.48	2757
63	8R8M\|1\|a	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.	ELECTRON MICROSCOPY	2.4	2738
64	30QZ\|1\|a	E. coli 50S ribosome with peptidyl-tRNA and Hsp15	ELECTRON MICROSCOPY	2.23	2737
65	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2897
66	9D89\|1\|D	E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)	ELECTRON MICROSCOPY	1.95	2728
67	6XZ7\|1\|A	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	2897
68	8AKN\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	2753
69	9QQQ\|1\|a	Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)	ELECTRON MICROSCOPY	2.26	2751
70	8R6C\|1\|a	70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.	ELECTRON MICROSCOPY	2.2	2753
71	9FBV\|1\|a	70S Escherichia coli ribosome with P-site initiatior tRNA.	ELECTRON MICROSCOPY	2.4	2753
72	8CEU\|1\|a	Retapamulin and Capreomycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.83	2753
73	8ANA\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	ELECTRON MICROSCOPY	2.1	2733
74	8CGV\|1\|a	Tiamulin bound to the 50S subunit	ELECTRON MICROSCOPY	1.66	2687
75	8AYE\|1\|a	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	2753
76	9T0Y\|1\|a	E. coli 70S ribosome from delta-9 strain	ELECTRON MICROSCOPY	1.87	2853
77	9T6M\|1\|a	E. coli 70S ribosome from delta-10 strain	ELECTRON MICROSCOPY	1.87	2851
78	8QBT\|1\|A	E. coli ApdP-stalled ribosomal complex	ELECTRON MICROSCOPY	2.2	2841
79	8FTO\|1\|a	E. coli 70S ribosome with an improved MS2 tag inserted in H98	ELECTRON MICROSCOPY	1.85	2767
80	7S1K\|1\|I	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	2898
81	7S1H\|1\|I	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	2898
82	7S1G\|1\|I	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	2898
83	7S1I\|1\|I	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	2898
84	7S1J\|1\|I	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	2898
85	9N2C\|1\|23	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)	ELECTRON MICROSCOPY	2.4	2768
86	7N1P\|1\|23	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	2904
87	28UK\|1\|a	E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.24	2757
88	28UM\|1\|a	E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.15	2757
89	9TMI\|1\|a	E. coli 70S ribosome with A- and P-site tRNA	ELECTRON MICROSCOPY	2.08	2757
90	28UI\|1\|a	E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.1	2757
91	9TQA\|1\|a	E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA	ELECTRON MICROSCOPY	2.06	2757
92	9SYH\|1\|a	E. coli 70S ribosome from deltaRlmE strain	ELECTRON MICROSCOPY	1.89	2857
93	9GHA\|1\|a	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)	ELECTRON MICROSCOPY	2.24	2782
94	9GHB\|1\|a	Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)	ELECTRON MICROSCOPY	2.21	2782
95	9GHE\|1\|a	Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)	ELECTRON MICROSCOPY	1.87	2782
96	8CGK\|1\|a	Lincomycin and Avilamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.64	2699
97	9GHD\|1\|a	Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)	ELECTRON MICROSCOPY	2.41	2782
98	9GHF\|1\|a	Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)	ELECTRON MICROSCOPY	2.4	2782
99	8CAM\|1\|a	Evernimicin bound to the 50S subunit	ELECTRON MICROSCOPY	1.86	2690
100	8CGD\|1\|a	Clindamycin bound to the 50S subunit	ELECTRON MICROSCOPY	1.98	2748
101	9Q3R\|1\|A	Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution	ELECTRON MICROSCOPY	1.99	2899
102	9Q3Q\|1\|A	Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution	ELECTRON MICROSCOPY	2.01	2899
103	8QOA\|1\|a	Structure of SecM-stalled Escherichia coli 70S ribosome	ELECTRON MICROSCOPY	2	2753
104	9O2Y\|1\|a	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl	ELECTRON MICROSCOPY	2.14	2753
105	9O2X\|1\|a	Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl	ELECTRON MICROSCOPY	2.29	2753
106	8EMM\|1\|a	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates	ELECTRON MICROSCOPY	2.1	2753
107	8G6W\|1\|a	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	2753
108	8G6Y\|1\|a	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.09	2753
109	8G6X\|1\|a	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.31	2753
110	7K00\|1\|a	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	2753
111	8EIU\|1\|a	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	2753
112	8IFB\|1\|a	Dibekacin-bound E.coli 70S ribosome in the PURE system	ELECTRON MICROSCOPY	2.43	2753
113	9RBF\|1\|a	Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC	ELECTRON MICROSCOPY	2.44	2753
114	7QQ3\|1\|I	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	ELECTRON MICROSCOPY	2.1	2898
115	9HYM\|1\|b	Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA	ELECTRON MICROSCOPY	2.2	2901
116	9HUS\|1\|b	Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs	ELECTRON MICROSCOPY	2.4	2901
117	7ZP8\|1\|b	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	2901
118	9HUQ\|1\|b	Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA	ELECTRON MICROSCOPY	2.49	2901
119	7Z20\|1\|b	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	2901
120	9N2B\|1\|23	Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)	ELECTRON MICROSCOPY	2.2	2767
121	7PJS\|1\|A	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	2903
122	8W51\|1\|A	Structure of YchF(H114A) on E.coli 50S ribosomal subunit	ELECTRON MICROSCOPY	2.4	2904
123	9T1I\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 8	ELECTRON MICROSCOPY	2.3	596
124	9T1H\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 7	ELECTRON MICROSCOPY	2.33	596
125	9T1F\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 5	ELECTRON MICROSCOPY	2.32	596
126	9T2M\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 3	ELECTRON MICROSCOPY	2.06	597
127	9T2L\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 2	ELECTRON MICROSCOPY	2.07	597
128	9T1E\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 4	ELECTRON MICROSCOPY	2.28	596
129	9T1G\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 6	ELECTRON MICROSCOPY	2.29	596
130	9T1A\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 1	ELECTRON MICROSCOPY	2.39	596
131	9T19\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 0	ELECTRON MICROSCOPY	2.41	596
132	9T1J\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 9	ELECTRON MICROSCOPY	2.23	596
133	9T2Q\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 7	ELECTRON MICROSCOPY	2.08	597
134	9T1B\|1\|a	E. coli 70S ribosome from delta-RlmE strain, PTC class 2	ELECTRON MICROSCOPY	2.32	596
135	9T8N\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 3	ELECTRON MICROSCOPY	2.22	592
136	9T2K\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 1	ELECTRON MICROSCOPY	2.06	597
137	9T2S\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 9	ELECTRON MICROSCOPY	2.07	597
138	8KIE\|1\|a	Structure of YchF with 50S ribosomal subunit (local map)	ELECTRON MICROSCOPY	2.5	361
139	9T2R\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 8	ELECTRON MICROSCOPY	2.22	597
140	9T2P\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 6	ELECTRON MICROSCOPY	2.08	597
141	9T2O\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 5	ELECTRON MICROSCOPY	2.07	597
142	9T2J\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 0	ELECTRON MICROSCOPY	2.02	596
143	9T2N\|1\|a	E. coli 70S ribosome from delta-9 strain, PTC class 4	ELECTRON MICROSCOPY	2.06	597
144	9T8R\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 7	ELECTRON MICROSCOPY	2.22	585
145	9T8Q\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 6	ELECTRON MICROSCOPY	2.23	592
146	9T8M\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 2	ELECTRON MICROSCOPY	2.2	589
147	9T8K\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 0	ELECTRON MICROSCOPY	2.18	590
148	9T8S\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 8	ELECTRON MICROSCOPY	2.22	590
149	9T8T\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 9	ELECTRON MICROSCOPY	2.23	587
150	9T8O\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 4	ELECTRON MICROSCOPY	2.19	587
151	9T8P\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 5	ELECTRON MICROSCOPY	2.22	589
152	9T8L\|1\|a	E. coli 70S ribosome from delta-10 strain, PTC class 1	ELECTRON MICROSCOPY	2.21	592
153	8CGU\|1\|a	Gentamicin bound to the 30S body	ELECTRON MICROSCOPY	1.89	31
154	8CGJ\|1\|a	Streptomycin bound to the 30S body	ELECTRON MICROSCOPY	1.79	31
155	8CEP\|1\|a	Round2 30S head (no antibiotic)	ELECTRON MICROSCOPY	2.04	31
156	8CGR\|1\|a	Apramycin bound to the 30S body	ELECTRON MICROSCOPY	2.12	30

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_83717.189 Current

Release history

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