RNA 3D Hub //

Equivalence class NR_2.5_83979.1 Current

Showing 1 to 7 of 7 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
12Z75|1|B+ 2Z75|1|A (rep)glmS glucosamine-6-phosphate activated ribozymeglmS ribozyme RNA, glmS ribozyme substrate RNACaldanaerobacter subterraneusBacteriaRF00234T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphateX-ray diffraction1.71442007-09-04
22Z74|1|B+ 2Z74|1|AglmS ribozyme RNA, glmS ribozyme substrate RNAT. tengcongensis glmS ribozyme bound to glucose-6-phosphateX-ray diffraction2.21442007-09-04
32GCV|1|B+ 2GCV|1|AglmS ribozyme product oligonucleotide, glmS ribozyme RNAPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.11432006-09-26
42H0X|1|B+ 2H0X|1|AglmS ribozyme amino RNA inhibitor, glmS ribozyme RNAPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.31432006-09-26
52H0W|1|B+ 2H0W|1|AglmS ribozyme product oligonucleotide, glmS ribozyme RNAPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.41432006-09-26
62GCS|1|B+ 2GCS|1|AglmS ribozyme amino RNA inhibitor, glmS ribozyme RNAPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.11432006-09-26
72H0S|1|B+ 2H0S|1|AglmS ribozyme deoxy RNA inhibitor, glmS ribozyme RNAPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.351452006-09-26

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 7 of 7 entries
#SViewPDBTitleMethodResolution#NTs
12Z74|1|B+ 2Z74|1|AT. tengcongensis glmS ribozyme bound to glucose-6-phosphateX-RAY DIFFRACTION2.2144
22Z75|1|B+ 2Z75|1|AT. tengcongensis glmS ribozyme bound to glucosamine-6-phosphateX-RAY DIFFRACTION1.7144
32H0X|1|B+ 2H0X|1|APre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.3143
42GCS|1|B+ 2GCS|1|APre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.1143
52H0W|1|B+ 2H0W|1|APost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.4143
62GCV|1|B+ 2GCV|1|APost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.1143
72H0S|1|B+ 2H0S|1|APre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.35145

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

2Z74|1|B+2Z74|1|A:2Z74|1|B+2Z74|1|A = 02Z74|1|B+2Z74|1|A:2Z75|1|B+2Z75|1|A = 0.01562Z74|1|B+2Z74|1|A:2H0X|1|B+2H0X|1|A = 0.02242Z74|1|B+2Z74|1|A:2GCS|1|B+2GCS|1|A = 0.02412Z74|1|B+2Z74|1|A:2H0W|1|B+2H0W|1|A = 0.04462Z74|1|B+2Z74|1|A:2GCV|1|B+2GCV|1|A = 0.04542Z74|1|B+2Z74|1|A:2H0S|1|B+2H0S|1|A = 0.05032Z75|1|B+2Z75|1|A:2Z74|1|B+2Z74|1|A = 0.01562Z75|1|B+2Z75|1|A:2Z75|1|B+2Z75|1|A = 02Z75|1|B+2Z75|1|A:2H0X|1|B+2H0X|1|A = 0.01732Z75|1|B+2Z75|1|A:2GCS|1|B+2GCS|1|A = 0.01762Z75|1|B+2Z75|1|A:2H0W|1|B+2H0W|1|A = 0.04172Z75|1|B+2Z75|1|A:2GCV|1|B+2GCV|1|A = 0.04322Z75|1|B+2Z75|1|A:2H0S|1|B+2H0S|1|A = 0.04962H0X|1|B+2H0X|1|A:2Z74|1|B+2Z74|1|A = 0.02242H0X|1|B+2H0X|1|A:2Z75|1|B+2Z75|1|A = 0.01732H0X|1|B+2H0X|1|A:2H0X|1|B+2H0X|1|A = 02H0X|1|B+2H0X|1|A:2GCS|1|B+2GCS|1|A = 0.00982H0X|1|B+2H0X|1|A:2H0W|1|B+2H0W|1|A = 0.04272H0X|1|B+2H0X|1|A:2GCV|1|B+2GCV|1|A = 0.04432H0X|1|B+2H0X|1|A:2H0S|1|B+2H0S|1|A = 0.05112GCS|1|B+2GCS|1|A:2Z74|1|B+2Z74|1|A = 0.02412GCS|1|B+2GCS|1|A:2Z75|1|B+2Z75|1|A = 0.01762GCS|1|B+2GCS|1|A:2H0X|1|B+2H0X|1|A = 0.00982GCS|1|B+2GCS|1|A:2GCS|1|B+2GCS|1|A = 02GCS|1|B+2GCS|1|A:2H0W|1|B+2H0W|1|A = 0.04272GCS|1|B+2GCS|1|A:2GCV|1|B+2GCV|1|A = 0.04602GCS|1|B+2GCS|1|A:2H0S|1|B+2H0S|1|A = 0.05272H0W|1|B+2H0W|1|A:2Z74|1|B+2Z74|1|A = 0.04462H0W|1|B+2H0W|1|A:2Z75|1|B+2Z75|1|A = 0.04172H0W|1|B+2H0W|1|A:2H0X|1|B+2H0X|1|A = 0.04272H0W|1|B+2H0W|1|A:2GCS|1|B+2GCS|1|A = 0.04272H0W|1|B+2H0W|1|A:2H0W|1|B+2H0W|1|A = 02H0W|1|B+2H0W|1|A:2GCV|1|B+2GCV|1|A = 0.01692H0W|1|B+2H0W|1|A:2H0S|1|B+2H0S|1|A = 0.03462GCV|1|B+2GCV|1|A:2Z74|1|B+2Z74|1|A = 0.04542GCV|1|B+2GCV|1|A:2Z75|1|B+2Z75|1|A = 0.04322GCV|1|B+2GCV|1|A:2H0X|1|B+2H0X|1|A = 0.04432GCV|1|B+2GCV|1|A:2GCS|1|B+2GCS|1|A = 0.04602GCV|1|B+2GCV|1|A:2H0W|1|B+2H0W|1|A = 0.01692GCV|1|B+2GCV|1|A:2GCV|1|B+2GCV|1|A = 02GCV|1|B+2GCV|1|A:2H0S|1|B+2H0S|1|A = 0.03412H0S|1|B+2H0S|1|A:2Z74|1|B+2Z74|1|A = 0.05032H0S|1|B+2H0S|1|A:2Z75|1|B+2Z75|1|A = 0.04962H0S|1|B+2H0S|1|A:2H0X|1|B+2H0X|1|A = 0.05112H0S|1|B+2H0S|1|A:2GCS|1|B+2GCS|1|A = 0.05272H0S|1|B+2H0S|1|A:2H0W|1|B+2H0W|1|A = 0.03462H0S|1|B+2H0S|1|A:2GCV|1|B+2GCV|1|A = 0.03412H0S|1|B+2H0S|1|A:2H0S|1|B+2H0S|1|A = 02Z74|1|B+2Z74|1|A2Z75|1|B+2Z75|1|A2H0X|1|B+2H0X|1|A2GCS|1|B+2GCS|1|A2H0W|1|B+2H0W|1|A2GCV|1|B+2GCV|1|A2H0S|1|B+2H0S|1|ADiscrepancy0.000.010.020.030.040.05

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