RNA 3D Hub //

Equivalence class NR_2.5_84517.2 Current

Showing 1 to 6 of 6 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15FJC|1|A (rep)SAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bUX-ray diffraction1.71942016-05-25
25FK4|1|ASAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UUX-ray diffraction2.43932016-05-25
33GX5|1|ARNA (94-MER)Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAMX-ray diffraction2.4942010-01-12
45FK3|1|ASAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CCX-ray diffraction2.5942016-05-25
55FK6|1|ASAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CAX-ray diffraction2.5942016-05-25
65FK1|1|ASAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UGX-ray diffraction2.5942016-05-25

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 6 of 6 entries
#SViewPDBTitleMethodResolution#NTs
13GX5|1|ACrystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAMX-RAY DIFFRACTION2.494
25FK1|1|ASAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UGX-RAY DIFFRACTION2.594
35FK3|1|ASAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CCX-RAY DIFFRACTION2.594
45FK6|1|ASAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CAX-RAY DIFFRACTION2.594
55FK4|1|ASAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UUX-RAY DIFFRACTION2.4393
65FJC|1|ASAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bUX-RAY DIFFRACTION1.7194

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

3GX5|1|A:3GX5|1|A = 03GX5|1|A:5FK1|1|A not available3GX5|1|A:5FK3|1|A not available3GX5|1|A:5FK6|1|A not available3GX5|1|A:5FK4|1|A not available3GX5|1|A:5FJC|1|A not available5FK1|1|A:3GX5|1|A not available5FK1|1|A:5FK1|1|A = 05FK1|1|A:5FK3|1|A = 0.04965FK1|1|A:5FK6|1|A = 0.07125FK1|1|A:5FK4|1|A = 0.16295FK1|1|A:5FJC|1|A = 0.16715FK3|1|A:3GX5|1|A not available5FK3|1|A:5FK1|1|A = 0.04965FK3|1|A:5FK3|1|A = 05FK3|1|A:5FK6|1|A = 0.06985FK3|1|A:5FK4|1|A = 0.15815FK3|1|A:5FJC|1|A = 0.15665FK6|1|A:3GX5|1|A not available5FK6|1|A:5FK1|1|A = 0.07125FK6|1|A:5FK3|1|A = 0.06985FK6|1|A:5FK6|1|A = 05FK6|1|A:5FK4|1|A = 0.13215FK6|1|A:5FJC|1|A = 0.14285FK4|1|A:3GX5|1|A not available5FK4|1|A:5FK1|1|A = 0.16295FK4|1|A:5FK3|1|A = 0.15815FK4|1|A:5FK6|1|A = 0.13215FK4|1|A:5FK4|1|A = 05FK4|1|A:5FJC|1|A = 0.11435FJC|1|A:3GX5|1|A not available5FJC|1|A:5FK1|1|A = 0.16715FJC|1|A:5FK3|1|A = 0.15665FJC|1|A:5FK6|1|A = 0.14285FJC|1|A:5FK4|1|A = 0.11435FJC|1|A:5FJC|1|A = 03GX5|1|A5FK1|1|A5FK3|1|A5FK6|1|A5FK4|1|A5FJC|1|ADiscrepancy0.000.050.100.15

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0113 s