Equivalence class NR_2.5_90633.28 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9QEH|1|A (rep) | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus USA300 | Bacteria | RF02541 | Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin | Electron microscopy | 2.08 | 2616 | 2025-06-04 |
| 2 | 9QEG|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus USA300 | Bacteria | RF02541 | Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin | Electron microscopy | 2.21 | 2586 | 2025-06-04 |
| 3 | 9GHG|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU) | Electron microscopy | 2.22 | 2848 | 2025-03-26 |
| 4 | 9T4R|1|a | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 70S initiation complex with a natural mRNA | Electron microscopy | 2.3 | 2912 | 2026-02-25 |
| 5 | 7ASM|1|A | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | Staphylococcus aureus 50S after 30 minutes incubation at 37C | Electron microscopy | 2.48 | 2834 | 2021-11-17 |
| 6 | 6S0Z|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.3 | 2905 | 2019-08-21 |
| 7 | 6S0X|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2905 | 2019-08-21 |
| 8 | 8P2G|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state | Electron microscopy | 2.02 | 2844 | 2024-05-01 |
| 9 | 8P2F|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state | Electron microscopy | 2.44 | 2844 | 2024-05-01 |
| 10 | 8P2H|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF02541 | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state | Electron microscopy | 2.49 | 2844 | 2024-05-01 |
Release history
| Release | 4.28 |
|---|---|
| Date | 2026-02-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 7ASM|1|A | Staphylococcus aureus 50S after 30 minutes incubation at 37C | ELECTRON MICROSCOPY | 2.48 | 2834 | |
| 2 | 9QEH|1|A | Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin | ELECTRON MICROSCOPY | 2.08 | 2616 | |
| 3 | 9QEG|1|A | Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin | ELECTRON MICROSCOPY | 2.21 | 2586 | |
| 4 | 9T4R|1|a | Staphylococcus aureus 70S initiation complex with a natural mRNA | ELECTRON MICROSCOPY | 2.3 | 2912 | |
| 5 | 9GHG|1|A | Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU) | ELECTRON MICROSCOPY | 2.22 | 2848 | |
| 6 | 8P2F|1|A | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state | ELECTRON MICROSCOPY | 2.44 | 2844 | |
| 7 | 8P2G|1|A | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state | ELECTRON MICROSCOPY | 2.02 | 2844 | |
| 8 | 8P2H|1|A | Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state | ELECTRON MICROSCOPY | 2.49 | 2844 | |
| 9 | 6S0Z|1|A | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2905 | |
| 10 | 6S0X|1|A | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2905 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: