Equivalence class NR_2.5_95119.6 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9ZWW|1|F (rep) | 5'-OH RNA (5'-r(CpCpA)-3') | synthetic construct | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP, Mg, and the trinucleotide substrate CCA. | X-ray diffraction | 1.85 | 3 | 2026-09-23 | |||
| 2 | 9ZWW|1|E | 5'-OH RNA (5'-r(CpCpA)-3') | synthetic construct | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP, Mg, and the trinucleotide substrate CCA. | X-ray diffraction | 1.85 | 3 | 2026-09-23 | |||
| 3 | 9ZWW|1|D | 5'-OH RNA (5'-r(CpCpA)-3') | synthetic construct | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP, Mg, and the trinucleotide substrate CCA. | X-ray diffraction | 1.85 | 3 | 2026-09-23 | |||
| 4 | 9J1M|1|u | tRNA | Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 | KU13-bond Mycobacterium tuberculosis 70S ribosome | Electron microscopy | 2.33 | 3 | 2025-03-19 | |||
| 5 | 9GUL|1|2 | P-tRNA CCA tail | Homo sapiens | Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex | Electron microscopy | 2.2 | 3 | 2025-09-24 | |||
| 6 | 9I1W|1|9 | E-site tRNA (5'-R(P*CP*CP*A)-3') | Thermochaetoides thermophila DSM 1495 | High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum | Electron microscopy | 2.38 | 3 | 2025-12-17 | |||
| 7 | 1VQO|1|4 | 5'-R(*CP*CP*(PPU))-3' | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-ray diffraction | 2.2 | 3 | 2005-11-29 |
Release history
| Release | 4.58 |
|---|---|
| Date | 2026-09-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9GUL|1|2 | Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex | ELECTRON MICROSCOPY | 2.2 | 3 | |
| 2 | 9J1M|1|u | KU13-bond Mycobacterium tuberculosis 70S ribosome | ELECTRON MICROSCOPY | 2.33 | 3 | |
| 3 | 9ZWW|1|D | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP, Mg, and the trinucleotide substrate CCA. | X-RAY DIFFRACTION | 1.85 | 3 | |
| 4 | 9ZWW|1|E | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP, Mg, and the trinucleotide substrate CCA. | X-RAY DIFFRACTION | 1.85 | 3 | |
| 5 | 9ZWW|1|F | Crystal structure of the N4BP2 polynucleotide kinase domain complexed with ATP, Mg, and the trinucleotide substrate CCA. | X-RAY DIFFRACTION | 1.85 | 3 | |
| 6 | 9I1W|1|9 | High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum | ELECTRON MICROSCOPY | 2.38 | 3 | |
| 7 | 1VQO|1|4 | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-RAY DIFFRACTION | 2.2 | 3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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