NR_2.5_97519.79

Members (57)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	9NO7\|1\|A (rep)	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution	Electron microscopy	2.13	2734	2025-06-18
2	9D0J\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2871	2024-11-20
3	8VTW\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-ray diffraction	2.35	2872	2024-08-07
4	9DFC\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2871	2024-11-20
5	8VTW\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-ray diffraction	2.35	2867	2024-08-07
6	9MTP\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-ray diffraction	2.4	2871	2025-06-18
7	9D0I\|1\|1A		23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	2871	2025-08-27
8	7RQB\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	2872	2022-01-26
9	9D0H\|1\|1A		23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2871	2025-08-27
10	7RQB\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	2867	2022-01-26
11	8FC6\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-ray diffraction	2.35	2872	2023-07-26
12	9D0G\|1\|1A		23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2871	2025-08-27
13	8FC6\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-ray diffraction	2.35	2867	2023-07-26
14	9DFC\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2800	2024-11-20
15	9D0J\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2800	2024-11-20
16	8FC2\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-ray diffraction	2.5	2872	2023-07-12
17	8FC2\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-ray diffraction	2.5	2867	2023-07-12
18	9MTP\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-ray diffraction	2.4	2800	2025-06-18
19	8FC1\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-ray diffraction	2.5	2872	2023-07-12
20	4Y4O\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2872	2015-03-18
21	8G2A\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	2871	2023-12-27
22	4Y4O\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2867	2015-03-18
23	8VTU\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2871	2024-08-07
24	8FC1\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-ray diffraction	2.5	2867	2023-07-12
25	8G2A\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	2800	2023-12-27
26	8VTU\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2800	2024-08-07
27	9D0I\|1\|2A		23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-ray diffraction	2.45	2800	2025-08-27
28	8VTX\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2871	2024-08-07
29	7RQE\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	2872	2022-01-26
30	7RQE\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	2867	2022-01-26
31	8VTX\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2800	2024-08-07
32	9D0H\|1\|2A		23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2800	2025-08-27
33	7RQ8\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2871	2021-10-13
34	8FC4\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-ray diffraction	2.45	2872	2023-07-26
35	9D0G\|1\|2A		23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2800	2025-08-27
36	7RQ8\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2800	2021-10-13
37	8FC4\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-ray diffraction	2.45	2867	2023-07-26
38	7RQC\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	2872	2022-01-26
39	7RQC\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	2867	2022-01-26
40	8CVK\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2871	2022-10-19
41	6XHW\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2871	2020-12-23
42	7RQD\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	2872	2022-01-26
43	7RQD\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Deacylated tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	2867	2022-01-26
44	6XHV\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	2871	2020-12-23
45	6XHW\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2800	2020-12-23
46	8CVK\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2800	2022-10-19
47	8CVJ\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2871	2022-10-19
48	6XHV\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	2800	2020-12-23
49	7RQA\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	2872	2022-01-26
50	7RQA\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA, A-site Aminoacyl-tRNA Analog, P-site Peptidyl-tRNA Analog RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	2867	2022-01-26
51	4W2F\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2800	2014-10-15
52	4W2F\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2871	2014-10-15
53	8CVL\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	2871	2022-10-19
54	8CVJ\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2800	2022-10-19
55	4Y4P\|1\|1A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2871	2015-03-18
56	4Y4P\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2800	2015-03-18
57	8CVL\|1\|2A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	2800	2022-10-19

Release history

Release	4.2
Date	2025-08-27

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	9MTP\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-RAY DIFFRACTION	2.4	2871
2	9MTP\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution	X-RAY DIFFRACTION	2.4	2800
3	6XHV\|1\|2A	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	2800
4	6XHV\|1\|1A	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	2871
5	9D0G\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
6	9D0J\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
7	8VTX\|1\|1A	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	2871
8	8CVL\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	2871
9	6XHW\|1\|1A	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
10	8CVJ\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	2871
11	8CVK\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
12	9DFC\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
13	8VTU\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	2871
14	8G2A\|1\|1A	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	2871
15	7RQ8\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
16	9D0H\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2871
17	9D0I\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	2871
18	4Y4P\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	2871
19	4W2F\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2871
20	4W2F\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2800
21	4Y4P\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	2800
22	9D0G\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
23	9D0J\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
24	8VTX\|1\|2A	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	2800
25	8CVL\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	2800
26	7RQ8\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
27	9D0I\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	2800
28	9D0H\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
29	8G2A\|1\|2A	Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution	X-RAY DIFFRACTION	2.45	2800
30	8VTU\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	2800
31	9DFC\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
32	6XHW\|1\|2A	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
33	8CVK\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	2800
34	8CVJ\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	2800
35	9NO7\|1\|A	Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution	ELECTRON MICROSCOPY	2.13	2734
36	8FC2\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	2867
37	7RQC\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	2867
38	7RQE\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	2867
39	7RQD\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	2867
40	7RQB\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	2867
41	8VTW\|1\|2A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-RAY DIFFRACTION	2.35	2867
42	8FC6\|1\|2A	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-RAY DIFFRACTION	2.35	2867
43	8FC4\|1\|2A	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-RAY DIFFRACTION	2.45	2867
44	8FC1\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	2867
45	4Y4O\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	2867
46	7RQA\|1\|2A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	2867
47	4Y4O\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	2872
48	8FC2\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	2872
49	8VTW\|1\|1A	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution	X-RAY DIFFRACTION	2.35	2872
50	7RQB\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	2872
51	7RQC\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	2872
52	7RQE\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	2872
53	7RQD\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	2872
54	7RQA\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	2872
55	8FC6\|1\|1A	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution	X-RAY DIFFRACTION	2.35	2872
56	8FC4\|1\|1A	Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution	X-RAY DIFFRACTION	2.45	2872
57	8FC1\|1\|1A	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution	X-RAY DIFFRACTION	2.5	2872

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_97519.79 Current

Release history

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