Equivalence class NR_20.0_00681.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9K4F|1|D+ 9K4F|1|B+ 9K4F|1|C (rep) | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class2 | Electron microscopy | 3.27 | 133 | 2025-10-22 |
| 2 | 9K4D|1|D+ 9K4D|1|B+ 9K4D|1|C | Trans-activating crRNA | DNA (50-MER), RNA (100-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex | Electron microscopy | 3.53 | 149 | 2025-10-22 |
| 3 | 9K4E|1|D | Trans-activating crRNA | RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class1 | Electron microscopy | 3.3 | 87 | 2025-10-22 |
| 4 | 9W7Q|1|D+ 9W7Q|1|B+ 9W7Q|1|C | Trans-activating crRNA | DNA (50-MER), RNA (100-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class A | Electron microscopy | 3.79 | 138 | 2025-12-31 |
| 5 | 9K4H|1|D+ 9K4H|1|B+ 9K4H|1|C | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class3 | Electron microscopy | 3.36 | 136 | 2025-10-22 |
| 6 | 9W7V|1|D+ 9W7V|1|B+ 9W7V|1|C | Trans-activating crRNA | DNA (50-MER), RNA (100-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class D | Electron microscopy | 3.81 | 136 | 2025-12-31 |
| 7 | 9W7T|1|D+ 9W7T|1|B+ 9W7T|1|C | Trans-activating crRNA | DNA (50-MER), RNA (100-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class B | Electron microscopy | 3.91 | 147 | 2025-12-31 |
| 8 | 9WAW|1|D+ 9WAW|1|B+ 9WAW|1|C | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class E | Electron microscopy | 3.95 | 135 | 2025-12-31 |
| 9 | 9K4C|1|D+ 9K4C|1|B+ 9K4C|1|C | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex | Electron microscopy | 3.84 | 152 | 2025-10-22 |
| 10 | 9W7U|1|D+ 9W7U|1|B+ 9W7U|1|C | Trans-activating crRNA | DNA (50-MER), RNA (100-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class C | Electron microscopy | 3.83 | 147 | 2025-12-31 |
| 11 | 9WAA|1|D+ 9WAA|1|B+ 9WAA|1|C | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class C | Electron microscopy | 4.17 | 150 | 2025-12-31 |
| 12 | 9WA9|1|D+ 9WA9|1|B+ 9WA9|1|C | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class B | Electron microscopy | 4.12 | 151 | 2025-12-31 |
| 13 | 9W9D|1|D+ 9W9D|1|B+ 9W9D|1|C | Trans-activating crRNA | DNA (50-MER), RNA (102-MER) | synthetic construct | Synthetic | RF02348 | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex | Electron microscopy | 4.4 | 151 | 2025-12-31 |
Release history
| Release | 4.20 |
|---|---|
| Date | 2025-12-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9W9D|1|D+ 9W9D|1|B+ 9W9D|1|C | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex | ELECTRON MICROSCOPY | 4.4 | 151 | |
| 2 | 9WA9|1|D+ 9WA9|1|B+ 9WA9|1|C | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class B | ELECTRON MICROSCOPY | 4.12 | 151 | |
| 3 | 9WAA|1|D+ 9WAA|1|B+ 9WAA|1|C | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class C | ELECTRON MICROSCOPY | 4.17 | 150 | |
| 4 | 9W7V|1|D+ 9W7V|1|B+ 9W7V|1|C | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class D | ELECTRON MICROSCOPY | 3.81 | 136 | |
| 5 | 9K4D|1|D+ 9K4D|1|B+ 9K4D|1|C | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex | ELECTRON MICROSCOPY | 3.53 | 149 | |
| 6 | 9W7T|1|D+ 9W7T|1|B+ 9W7T|1|C | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class B | ELECTRON MICROSCOPY | 3.91 | 147 | |
| 7 | 9W7U|1|D+ 9W7U|1|B+ 9W7U|1|C | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class C | ELECTRON MICROSCOPY | 3.83 | 147 | |
| 8 | 9K4C|1|D+ 9K4C|1|B+ 9K4C|1|C | SuperFi Cas9 - 22nt sgRNA - DNA ternary complex | ELECTRON MICROSCOPY | 3.84 | 152 | |
| 9 | 9K4F|1|D+ 9K4F|1|B+ 9K4F|1|C | SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class2 | ELECTRON MICROSCOPY | 3.27 | 133 | |
| 10 | 9K4E|1|D | SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class1 | ELECTRON MICROSCOPY | 3.3 | 87 | |
| 11 | 9W7Q|1|D+ 9W7Q|1|B+ 9W7Q|1|C | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class A | ELECTRON MICROSCOPY | 3.79 | 138 | |
| 12 | 9WAW|1|D+ 9WAW|1|B+ 9WAW|1|C | SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class E | ELECTRON MICROSCOPY | 3.95 | 135 | |
| 13 | 9K4H|1|D+ 9K4H|1|B+ 9K4H|1|C | SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class3 | ELECTRON MICROSCOPY | 3.36 | 136 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: