Equivalence class NR_20.0_04576.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8EWB|1|EC (rep) | Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA | Taura syndrome virus | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III | Electron microscopy | 2.87 | 153 | 2023-09-06 | |||
| 2 | 8EVQ|1|EC | Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA | Taura syndrome virus | Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I | Electron microscopy | 2.72 | 200 | 2023-09-06 | |||
| 3 | 8EVP|1|EC | Internal ribosome entry site | Taura syndrome virus | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | Electron microscopy | 2.38 | 192 | 2023-09-06 | |||
| 4 | 8EUB|1|EC | Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA | Taura syndrome virus | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I | Electron microscopy | 2.52 | 195 | 2023-09-06 | |||
| 5 | 8EWC|1|EC | internal ribosome entry site (IRES) | Taura syndrome virus | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | Electron microscopy | 2.45 | 192 | 2023-09-06 | |||
| 6 | 8T3B|1|EC | TSV IRES | Taura syndrome virus | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I | Electron microscopy | 3.08 | 200 | 2024-12-11 | |||
| 7 | 8EVR|1|EC | TSV IRES | Taura syndrome virus | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | Electron microscopy | 2.87 | 191 | 2023-09-06 | |||
| 8 | 8T3D|1|EC | TSV IRES | Taura syndrome virus | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III | Electron microscopy | 2.95 | 136 | 2024-12-11 | |||
| 9 | 8T3F|1|EC | TSV IRES | Taura syndrome virus | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V | Electron microscopy | 3.09 | 133 | 2024-12-11 | |||
| 10 | 8T3E|1|EC | TSV IRES | Taura syndrome virus | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV | Electron microscopy | 3.04 | 131 | 2024-12-11 | |||
| 11 | 8T3C|1|EC | TSV IRES | Taura syndrome virus | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | Electron microscopy | 3.86 | 200 | 2024-12-11 | |||
| 12 | 5JUT|1|EC | IRES | Taura syndrome virus | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 198 | 2016-10-05 | |||
| 13 | 5JUP|1|EC | IRES | Taura syndrome virus | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 198 | 2016-10-05 | |||
| 14 | 5JUO|1|EC | IRES | Taura syndrome virus | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 198 | 2016-10-05 | |||
| 15 | 3J6Y|1|IR | TSV IRES mRNA | Taura syndrome virus | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | Electron microscopy | 6.1 | 198 | 2014-06-11 | |||
| 16 | 3J6X|1|IR | TSV IRES mRNA | Taura syndrome virus | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | Electron microscopy | 6.1 | 198 | 2014-06-11 | |||
| 17 | 5JUS|1|EC | IRES | Taura syndrome virus | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | Electron microscopy | 4.2 | 198 | 2016-10-05 | |||
| 18 | 5JUU|1|EC | IRES | Taura syndrome virus | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 198 | 2016-10-05 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5JUU|1|EC | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 198 | |
| 2 | 5JUP|1|EC | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 198 | |
| 3 | 5JUO|1|EC | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 198 | |
| 4 | 5JUS|1|EC | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 4.2 | 198 | |
| 5 | 5JUT|1|EC | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | ELECTRON MICROSCOPY | 4 | 198 | |
| 6 | 8T3C|1|EC | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | ELECTRON MICROSCOPY | 3.86 | 200 | |
| 7 | 8T3B|1|EC | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I | ELECTRON MICROSCOPY | 3.08 | 200 | |
| 8 | 8EUB|1|EC | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I | ELECTRON MICROSCOPY | 2.52 | 195 | |
| 9 | 8EVQ|1|EC | Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I | ELECTRON MICROSCOPY | 2.72 | 200 | |
| 10 | 8T3E|1|EC | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV | ELECTRON MICROSCOPY | 3.04 | 131 | |
| 11 | 8EVR|1|EC | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | ELECTRON MICROSCOPY | 2.87 | 191 | |
| 12 | 8T3F|1|EC | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V | ELECTRON MICROSCOPY | 3.09 | 133 | |
| 13 | 8EWB|1|EC | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III | ELECTRON MICROSCOPY | 2.87 | 153 | |
| 14 | 8EVP|1|EC | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | ELECTRON MICROSCOPY | 2.38 | 192 | |
| 15 | 8EWC|1|EC | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | ELECTRON MICROSCOPY | 2.45 | 192 | |
| 16 | 8T3D|1|EC | Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III | ELECTRON MICROSCOPY | 2.95 | 136 | |
| 17 | 3J6X|1|IR | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | ELECTRON MICROSCOPY | 6.1 | 198 | |
| 18 | 3J6Y|1|IR | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | ELECTRON MICROSCOPY | 6.1 | 198 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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