RNA 3D Hub //

Equivalence class NR_20.0_06181.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18P8B|1|3 (rep)Large subunit ribosomal RNA23S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cellsElectron microscopy2.92024-11-20
28P7X|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cellsElectron microscopy3.032024-11-20
37P6Z|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae 70S ribosome in untreated cellsElectron microscopy3.52022-05-25
47OOD|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cellsElectron microscopy3.42022-05-25
58P7Y|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunitElectron microscopy3.72024-11-20
67PAL|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy4.72022-05-25
77PIB|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy4.72022-05-25
87PHB|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy4.92022-05-25
97PAK|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy5.32022-05-25
107PIT|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy5.72022-05-25
117PI9|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy6.32022-05-25
127PAI|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy6.72022-05-25
137PAM|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy6.82022-05-25
147PAO|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy72022-05-25
157PAJ|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy7.32022-05-25
167PAR|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.22022-05-25
177PHA|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.52022-05-25
187PAU|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF02541free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cellsElectron microscopy8.32022-05-25
198P8V|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)Electron microscopy8.72024-11-20
208P8W|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasmoides pneumoniae M129BacteriaRF02541Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)Electron microscopy8.72024-11-20
217PH9|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy8.72022-05-25
227PAQ|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy8.92022-05-25
237PI8|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy8.92022-05-25
247PIC|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.12022-05-25
257PIP|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.32022-05-25
267PAH|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.52022-05-25
277PIO|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.52022-05-25
287PAT|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF02541free 50S in untreated Mycoplasma pneumoniae cellsElectron microscopy9.22022-05-25
297PIQ|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy9.72022-05-25
307PAN|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsElectron microscopy9.72022-05-25
317PHC|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsElectron microscopy9.92022-05-25
327PIR|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy12.12022-05-25
337PIA|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsElectron microscopy13.62022-05-25
347PIS|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsElectron microscopy152022-05-25
357PAS|1|3Large subunit ribosomal RNA23S ribosomal RNAMycoplasma pneumoniae M129BacteriaRF0254170S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsElectron microscopy162022-05-25

Release history

Release3.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.372
Date2024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17PAK|1|370S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.32878
27PAI|1|370S ribosome with P-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.72878
37PI9|1|370S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.32878
47PAJ|1|370S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY7.32878
58P8V|1|3Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)ELECTRON MICROSCOPY8.72907
68P8W|1|3Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)ELECTRON MICROSCOPY8.72907
78P7X|1|3Mycoplasma pneumoniae 70S ribosome in chloramphenicol-treated cellsELECTRON MICROSCOPY3.032907
88P7Y|1|3Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunitELECTRON MICROSCOPY3.72907
98P8B|1|3Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cellsELECTRON MICROSCOPY2.92907
107OOD|1|3Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cellsELECTRON MICROSCOPY3.42879
117P6Z|1|3Mycoplasma pneumoniae 70S ribosome in untreated cellsELECTRON MICROSCOPY3.52879
127PAL|1|370S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.72878
137PHB|1|370S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.92878
147PIP|1|370S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.32878
157PHA|1|370S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.52878
167PH9|1|370S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.72878
177PAH|1|370S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.52878
187PIO|1|370S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.52878
197PIQ|1|370S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.72878
207PI8|1|370S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.92878
217PAT|1|3free 50S in untreated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.22878
227PAU|1|3free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.32878
237PAR|1|370S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.22878
247PIC|1|370S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.12878
257PAN|1|370S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.72878
267PAQ|1|370S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY8.92878
277PIB|1|370S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY4.72878
287PIT|1|370S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY5.72878
297PAO|1|370S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY72878
307PAM|1|370S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY6.82878
317PHC|1|370S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY9.92878
327PIR|1|370S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY12.12878
337PIS|1|370S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY152878
347PIA|1|370S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cellsELECTRON MICROSCOPY13.62878
357PAS|1|370S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cellsELECTRON MICROSCOPY162878

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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