NR_20.0_06650.45

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8SCB\|1\|5+ 8SCB\|1\|8 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S_rRNA, 5.8S_rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Terminating ribosome with SRI-41315	Electron microscopy	2.5	3686	2023-12-27
2	7O7Z\|1\|B5+ 7O7Z\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	Electron microscopy	2.4	3920	2021-06-02
3	8RJB\|1\|K+ 8RJB\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	Electron microscopy	2.69243	3699	2024-01-24
4	8RJD\|1\|K+ 8RJD\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	Electron microscopy	2.78574	3699	2024-01-24
5	8RJC\|1\|K+ 8RJC\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	Electron microscopy	2.90061	3699	2024-01-24
6	8B6C\|1\|5+ 8B6C\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	Electron microscopy	2.79	3770	2023-02-22
7	8B5L\|1\|5+ 8B5L\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	Electron microscopy	2.86	3770	2023-03-01
8	9YQ0\|1\|5+ 9YQ0\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Vacant ribosome with P-site tRNA, substate 2, Structure Ib	Electron microscopy	2.9	3752	2025-12-17
9	9YQ1\|1\|5+ 9YQ1\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Vacant ribosome with P-site tRNA, substate 3, Structure Ic	Electron microscopy	2.9	3752	2025-12-17
10	8VVQ\|1\|WA+ 8VVQ\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets	Electron microscopy	2.7	3734	2025-07-30
11	9BDL\|1\|A28S+ 9BDL\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome with angiogenin	Electron microscopy	2.8	3708	2024-07-24
12	8BPO\|1\|A1+ 8BPO\|1\|C1	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	Electron microscopy	2.8	3694	2023-07-05
13	9YPO\|1\|5+ 9YPO\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IIa	Electron microscopy	3	3752	2025-12-17
14	9YPS\|1\|5+ 9YPS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IIb	Electron microscopy	3	3752	2025-12-17
15	9QQA\|1\|B5+ 9QQA\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of translating ribosome, NAC and NMT1	Electron microscopy	2.8	3862	2025-07-16
16	9YPV\|1\|5+ 9YPV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IId	Electron microscopy	3	3752	2025-12-17
17	8P2K\|1\|B5+ 8P2K\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of translating ribosome, NAC and METAP1	Electron microscopy	2.9	3920	2023-07-19
18	7UCK\|1\|5+ 7UCK\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28s rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	Electron microscopy	2.8	3697	2022-06-01
19	9YPT\|1\|5+ 9YPT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IIc	Electron microscopy	3.1	3752	2025-12-17
20	7NWI\|1\|5+ 7NWI\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA+BlaS, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	Electron microscopy	3.13	3818	2021-07-07
21	7TOR\|1\|A28S+ 7TOR\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.9	3703	2022-05-25
22	8VVP\|1\|WA+ 8VVP\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Codon sampling state obtained from Anisomycin-treated mammalian ribosomes	Electron microscopy	2.9	3734	2025-07-30
23	9BDN\|1\|A28S+ 9BDN\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome with angiogenin and tRNAAla	Electron microscopy	3.1	3708	2024-07-24
24	7ZJX\|1\|L5+ 7ZJX\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome programmed with SECIS and SBP2	Electron microscopy	3.1	3888	2022-09-07
25	9F1B\|1\|B5+ 9F1B\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	Electron microscopy	3.01	3862	2024-08-21
26	9MR4\|1\|5+ 9MR4\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	NAC: Ribosome nascent chain complex(Oxa1L)	Electron microscopy	2.65	3620	2025-08-20
27	7TM3\|1\|K+ 7TM3\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.25	3699	2022-10-19
28	6P5I\|1\|5+ 6P5I\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	3745	2019-09-18
29	9NDP\|1\|5+ 9NDP\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC	Electron microscopy	2.82	3685	2025-09-10
30	8BHF\|1\|A2+ 8BHF\|1\|C2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	Electron microscopy	3.1	3754	2023-09-06
31	7OBR\|1\|5+ 7OBR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	RNC-SRP early complex	Electron microscopy	2.8	3649	2021-07-21
32	7O81\|1\|B5+ 7O81\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	Electron microscopy	3.1	3920	2021-06-02
33	6P5K\|1\|5+ 6P5K\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	3745	2019-09-18
34	7UCJ\|1\|5+ 7UCJ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28s rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S translation initiation complex with mRNA and Harringtonine	Electron microscopy	3.1	3649	2022-06-01
35	6MTD\|1\|5+ 6MTD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	3748	2018-11-21
36	7TOQ\|1\|A25S+ 7TOQ\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	Electron microscopy	3.1	3805	2022-05-25
37	6MTE\|1\|5+ 6MTE\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	3748	2018-11-21
38	6P5N\|1\|5+ 6P5N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	3745	2019-09-25
39	6MTC\|1\|5+ 6MTC\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	3748	2018-11-21
40	6R5Q\|1\|5+ 6R5Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	3694	2019-07-10
41	9F1D\|1\|B5+ 9F1D\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	Electron microscopy	3.26	3862	2024-08-21
42	7MDZ\|1\|5+ 7MDZ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S rabbit ribosome stalled with benzamide-CHX	Electron microscopy	3.2	3692	2021-09-01
43	8VVT\|1\|WA+ 8VVT\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosomes bound to Anisomycin in the rotated conformation	Electron microscopy	2.9	3692	2025-07-30
44	5LZV\|1\|5+ 5LZV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	3694	2016-11-30
45	5LZS\|1\|5+ 5LZS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	3694	2016-11-30
46	6MTB\|1\|5+ 6MTB\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	3748	2018-11-21
47	9QQB\|1\|B5+ 9QQB\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	Electron microscopy	3.43	3920	2025-07-16
48	5LZZ\|1\|5+ 5LZZ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	3694	2016-11-30
49	6P5J\|1\|5+ 6P5J\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	3745	2019-09-18
50	7A01\|1\|e2+ 7A01\|1\|h2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.6	3981	2020-12-30
51	6R6P\|1\|5+ 6R6P\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	3818	2019-07-10
52	8VVR\|1\|WA+ 8VVR\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes	Electron microscopy	3.1	3734	2025-07-30
53	8VVS\|1\|WA+ 8VVS\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes	Electron microscopy	3.1	3734	2025-07-30
54	7NWG\|1\|51+ 7NWG\|1\|81	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	Electron microscopy	3.8	3777	2021-07-07
55	7QWQ\|1\|5+ 7QWQ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Ternary complex of ribosome nascent chain with SRP and NAC	Electron microscopy	2.83	3649	2022-03-16
56	8VFT\|1\|5+ 8VFT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Translating 80S rabbit ribosome stalled by emetine with eEF2	Electron microscopy	3.3	3685	2024-12-25
57	6ZVK\|1\|e2+ 6ZVK\|1\|h2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.49	4076	2020-12-23
58	6D90\|1\|5+ 6D90\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	3745	2018-06-06
59	7NFX\|1\|5+ 7NFX\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	Electron microscopy	3.2	3649	2021-06-02
60	7QWR\|1\|5+ 7QWR\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	Electron microscopy	2.9	3649	2022-03-09
61	5LZW\|1\|5+ 5LZW\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	3694	2016-11-30
62	7TUT\|1\|K+ 7TUT\|1\|v	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.88	3699	2022-10-19
63	5LZT\|1\|5+ 5LZT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	3694	2016-11-30
64	6HCF\|1\|52+ 6HCF\|1\|82	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	3785	2018-10-17
65	9F1C\|1\|B5+ 9F1C\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E	Electron microscopy	3.78	3862	2024-08-21
66	7NWH\|1\|5+ 7NWH\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	Electron microscopy	4.1	3694	2021-07-07
67	9BDP\|1\|A28S+ 9BDP\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla	Electron microscopy	3.7	3708	2024-07-24
68	8VVV\|1\|5+ 8VVV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian ribosomes bound to Anisomycin in the nonrotated conformation	Electron microscopy	3.1	3680	2025-07-30
69	6D9J\|1\|5+ 6D9J\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	3745	2018-06-06
70	6GZ5\|1\|A2+ 6GZ5\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	3769	2018-12-05
71	6GZ4\|1\|A2+ 6GZ4\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	3769	2018-12-05
72	5LZU\|1\|5+ 5LZU\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	3694	2016-11-30
73	6GZ3\|1\|A2+ 6GZ3\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	3769	2018-12-05
74	6FRK\|1\|5+ 6FRK\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	Electron microscopy	3.7	3814	2018-03-28
75	3JAH\|1\|5+ 3JAH\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	3818	2015-08-12
76	6R6G\|1\|5+ 6R6G\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	Electron microscopy	3.7	3694	2019-07-10
77	5LZY\|1\|5+ 5LZY\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	3694	2016-11-30
78	3JAG\|1\|5+ 3JAG\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	3818	2015-08-12
79	6HCJ\|1\|51+ 6HCJ\|1\|81	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	3786	2018-10-17
80	6R7Q\|1\|5+ 6R7Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	Electron microscopy	3.9	3694	2019-07-10
81	3JAI\|1\|5+ 3JAI\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	3818	2015-08-12
82	8VVU\|1\|WA+ 8VVU\|1\|YA	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA	Electron microscopy	3.8	3734	2025-07-30
83	5LZX\|1\|5+ 5LZX\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	3694	2016-11-30
84	3J92\|1\|5+ 3J92\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure and assembly pathway of the ribosome quality control complex	Electron microscopy	3.6	3818	2015-01-21
85	6FTI\|1\|u+ 6FTI\|1\|w	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	Electron microscopy	4.2	3818	2018-03-21
86	6FTJ\|1\|u+ 6FTJ\|1\|w	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	Electron microscopy	4.7	3818	2018-03-21
87	6HCQ\|1\|51+ 6HCQ\|1\|81	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit collided di-ribosome (collided monosome)	Electron microscopy	6.5	3786	2018-10-17
88	6HCM\|1\|52+ 6HCM\|1\|82	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the rabbit collided di-ribosome (stalled monosome)	Electron microscopy	6.8	3785	2018-10-17
89	7QWS\|1\|5+ 7QWS\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	Electron microscopy	3.4	3649	2022-03-09
90	6T59\|1\|54+ 6T59\|1\|84	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	Electron microscopy	3.11	3694	2019-11-27
91	4UJE\|1\|A2+ 4UJE\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	Electron microscopy	6.9	3773	2014-07-16
92	6FTG\|1\|u+ 6FTG\|1\|w	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	Electron microscopy	9.1	3818	2018-03-21
93	4D67\|1\|2+ 4D67\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RRNA, 5.8S RRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	3773	2015-03-04
94	4D5Y\|1\|2+ 4D5Y\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	3773	2015-03-04
95	4UJC\|1\|A2+ 4UJC\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	Electron microscopy	9.5	3773	2014-07-30
96	4UJD\|1\|A2+ 4UJD\|1\|A3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S Ribosomal RNA, 5.8S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	Electron microscopy	8.9	3773	2014-07-30
97	3JAJ\|1\|5+ 3JAJ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	3814	2015-08-05
98	3JAN\|1\|5+ 3JAN\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	3814	2015-08-05
99	7O7Y\|1\|B5+ 7O7Y\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	Electron microscopy	2.2	3920	2021-06-02
100	7ZJW\|1\|L5+ 7ZJW\|1\|L8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome as it decodes the Sec-UGA codon	Electron microscopy	2.8	3920	2022-10-19
101	7O80\|1\|B5+ 7O80\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	Electron microscopy	2.9	3920	2021-06-02
102	6SGC\|1\|54+ 6SGC\|1\|84	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	3754	2019-12-04
103	8BTK\|1\|B5+ 8BTK\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Structure of the TRAP complex with the Sec translocon and a translating ribosome	Electron microscopy	3.5	3920	2023-05-24
104	7OYD\|1\|5+ 7OYD\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Oryctolagus cuniculus	Eukarya	RF02543 + RF00002	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	Electron microscopy	2.3	3502	2022-07-20

Release history

Release	4.18
Date	2025-12-17

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	7NWG\|1\|51+ 7NWG\|1\|81	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	ELECTRON MICROSCOPY	3.8	3777
2	6HCJ\|1\|51+ 6HCJ\|1\|81	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	3786
3	6HCQ\|1\|51+ 6HCQ\|1\|81	Structure of the rabbit collided di-ribosome (collided monosome)	ELECTRON MICROSCOPY	6.5	3786
4	7NWH\|1\|5+ 7NWH\|1\|8	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	ELECTRON MICROSCOPY	4.1	3694
5	6HCM\|1\|52+ 6HCM\|1\|82	Structure of the rabbit collided di-ribosome (stalled monosome)	ELECTRON MICROSCOPY	6.8	3785
6	6HCF\|1\|52+ 6HCF\|1\|82	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	3785
7	6D90\|1\|5+ 6D90\|1\|8	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	3745
8	6D9J\|1\|5+ 6D9J\|1\|8	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	3745
9	7ZJW\|1\|L5+ 7ZJW\|1\|L8	Rabbit 80S ribosome as it decodes the Sec-UGA codon	ELECTRON MICROSCOPY	2.8	3920
10	8BTK\|1\|B5+ 8BTK\|1\|B8	Structure of the TRAP complex with the Sec translocon and a translating ribosome	ELECTRON MICROSCOPY	3.5	3920
11	6P5N\|1\|5+ 6P5N\|1\|8	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	3745
12	7UCJ\|1\|5+ 7UCJ\|1\|8	Mammalian 80S translation initiation complex with mRNA and Harringtonine	ELECTRON MICROSCOPY	3.1	3649
13	7UCK\|1\|5+ 7UCK\|1\|8	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	ELECTRON MICROSCOPY	2.8	3697
14	8B6C\|1\|5+ 8B6C\|1\|8	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	ELECTRON MICROSCOPY	2.79	3770
15	8B5L\|1\|5+ 8B5L\|1\|8	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	ELECTRON MICROSCOPY	2.86	3770
16	7OYD\|1\|5+ 7OYD\|1\|8	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	ELECTRON MICROSCOPY	2.3	3502
17	8VVT\|1\|WA+ 8VVT\|1\|YA	Mammalian ribosomes bound to Anisomycin in the rotated conformation	ELECTRON MICROSCOPY	2.9	3692
18	8VVV\|1\|5+ 8VVV\|1\|8	Mammalian ribosomes bound to Anisomycin in the nonrotated conformation	ELECTRON MICROSCOPY	3.1	3680
19	6MTE\|1\|5+ 6MTE\|1\|8	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	3748
20	6MTD\|1\|5+ 6MTD\|1\|8	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	3748
21	6MTC\|1\|5+ 6MTC\|1\|8	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	3748
22	6MTB\|1\|5+ 6MTB\|1\|8	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	3748
23	8RJB\|1\|K+ 8RJB\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	ELECTRON MICROSCOPY	2.69243	3699
24	8RJC\|1\|K+ 8RJC\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	ELECTRON MICROSCOPY	2.90061	3699
25	8RJD\|1\|K+ 8RJD\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	ELECTRON MICROSCOPY	2.78574	3699
26	8SCB\|1\|5+ 8SCB\|1\|8	Terminating ribosome with SRI-41315	ELECTRON MICROSCOPY	2.5	3686
27	5LZS\|1\|5+ 5LZS\|1\|8	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	3694
28	5LZU\|1\|5+ 5LZU\|1\|8	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	3694
29	5LZV\|1\|5+ 5LZV\|1\|8	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	3694
30	6R6G\|1\|5+ 6R6G\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	ELECTRON MICROSCOPY	3.7	3694
31	6R5Q\|1\|5+ 6R5Q\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	3694
32	6R7Q\|1\|5+ 6R7Q\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	ELECTRON MICROSCOPY	3.9	3694
33	6T59\|1\|54+ 6T59\|1\|84	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	ELECTRON MICROSCOPY	3.11	3694
34	7TM3\|1\|K+ 7TM3\|1\|v	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.25	3699
35	7TUT\|1\|K+ 7TUT\|1\|v	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.88	3699
36	8BPO\|1\|A1+ 8BPO\|1\|C1	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	ELECTRON MICROSCOPY	2.8	3694
37	9YPS\|1\|5+ 9YPS\|1\|8	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IIb	ELECTRON MICROSCOPY	3	3752
38	9YPV\|1\|5+ 9YPV\|1\|8	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IId	ELECTRON MICROSCOPY	3	3752
39	9YPO\|1\|5+ 9YPO\|1\|8	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IIa	ELECTRON MICROSCOPY	3	3752
40	9YPT\|1\|5+ 9YPT\|1\|8	GTPBP1GCPPhe-tRNA*ribosome in the open state, Structure IIc	ELECTRON MICROSCOPY	3.1	3752
41	8VVU\|1\|WA+ 8VVU\|1\|YA	Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA	ELECTRON MICROSCOPY	3.8	3734
42	8VVP\|1\|WA+ 8VVP\|1\|YA	Codon sampling state obtained from Anisomycin-treated mammalian ribosomes	ELECTRON MICROSCOPY	2.9	3734
43	8VVQ\|1\|WA+ 8VVQ\|1\|YA	Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets	ELECTRON MICROSCOPY	2.7	3734
44	6P5J\|1\|5+ 6P5J\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	3745
45	6P5I\|1\|5+ 6P5I\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	3745
46	6P5K\|1\|5+ 6P5K\|1\|8	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	3745
47	5LZT\|1\|5+ 5LZT\|1\|8	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	3694
48	5LZY\|1\|5+ 5LZY\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	3694
49	5LZZ\|1\|5+ 5LZZ\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	3694
50	5LZX\|1\|5+ 5LZX\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	3694
51	5LZW\|1\|5+ 5LZW\|1\|8	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	3694
52	8BHF\|1\|A2+ 8BHF\|1\|C2	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	ELECTRON MICROSCOPY	3.1	3754
53	6SGC\|1\|54+ 6SGC\|1\|84	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	3754
54	7MDZ\|1\|5+ 7MDZ\|1\|8	80S rabbit ribosome stalled with benzamide-CHX	ELECTRON MICROSCOPY	3.2	3692
55	9BDL\|1\|A28S+ 9BDL\|1\|A58S	80S ribosome with angiogenin	ELECTRON MICROSCOPY	2.8	3708
56	7TOR\|1\|A28S+ 7TOR\|1\|A58S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.9	3703
57	9YQ0\|1\|5+ 9YQ0\|1\|8	Vacant ribosome with P-site tRNA, substate 2, Structure Ib	ELECTRON MICROSCOPY	2.9	3752
58	9YQ1\|1\|5+ 9YQ1\|1\|8	Vacant ribosome with P-site tRNA, substate 3, Structure Ic	ELECTRON MICROSCOPY	2.9	3752
59	8VVS\|1\|WA+ 8VVS\|1\|YA	Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes	ELECTRON MICROSCOPY	3.1	3734
60	8VVR\|1\|WA+ 8VVR\|1\|YA	Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes	ELECTRON MICROSCOPY	3.1	3734
61	9BDP\|1\|A28S+ 9BDP\|1\|A58S	80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla	ELECTRON MICROSCOPY	3.7	3708
62	9BDN\|1\|A28S+ 9BDN\|1\|A58S	80S ribosome with angiogenin and tRNAAla	ELECTRON MICROSCOPY	3.1	3708
63	9MR4\|1\|5+ 9MR4\|1\|8	NAC: Ribosome nascent chain complex(Oxa1L)	ELECTRON MICROSCOPY	2.65	3620
64	9NDP\|1\|5+ 9NDP\|1\|8	Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC	ELECTRON MICROSCOPY	2.82	3685
65	7TOQ\|1\|A25S+ 7TOQ\|1\|A58S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	ELECTRON MICROSCOPY	3.1	3805
66	7O81\|1\|B5+ 7O81\|1\|B8	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	ELECTRON MICROSCOPY	3.1	3920
67	9QQA\|1\|B5+ 9QQA\|1\|B8	Ternary complex of translating ribosome, NAC and NMT1	ELECTRON MICROSCOPY	2.8	3862
68	9QQB\|1\|B5+ 9QQB\|1\|B8	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	ELECTRON MICROSCOPY	3.43	3920
69	9F1C\|1\|B5+ 9F1C\|1\|B8	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E	ELECTRON MICROSCOPY	3.78	3862
70	9F1D\|1\|B5+ 9F1D\|1\|B8	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	ELECTRON MICROSCOPY	3.26	3862
71	9F1B\|1\|B5+ 9F1B\|1\|B8	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	ELECTRON MICROSCOPY	3.01	3862
72	8P2K\|1\|B5+ 8P2K\|1\|B8	Ternary complex of translating ribosome, NAC and METAP1	ELECTRON MICROSCOPY	2.9	3920
73	7O7Y\|1\|B5+ 7O7Y\|1\|B8	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	ELECTRON MICROSCOPY	2.2	3920
74	7O7Z\|1\|B5+ 7O7Z\|1\|B8	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	ELECTRON MICROSCOPY	2.4	3920
75	7O80\|1\|B5+ 7O80\|1\|B8	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	ELECTRON MICROSCOPY	2.9	3920
76	8VFT\|1\|5+ 8VFT\|1\|8	Translating 80S rabbit ribosome stalled by emetine with eEF2	ELECTRON MICROSCOPY	3.3	3685
77	7ZJX\|1\|L5+ 7ZJX\|1\|L8	Rabbit 80S ribosome programmed with SECIS and SBP2	ELECTRON MICROSCOPY	3.1	3888
78	3J92\|1\|5+ 3J92\|1\|8	Structure and assembly pathway of the ribosome quality control complex	ELECTRON MICROSCOPY	3.6	3818
79	3JAJ\|1\|5+ 3JAJ\|1\|8	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	3814
80	3JAN\|1\|5+ 3JAN\|1\|8	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	3814
81	6FRK\|1\|5+ 6FRK\|1\|8	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	ELECTRON MICROSCOPY	3.7	3814
82	3JAI\|1\|5+ 3JAI\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	3818
83	3JAG\|1\|5+ 3JAG\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	3818
84	3JAH\|1\|5+ 3JAH\|1\|8	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	3818
85	6FTJ\|1\|u+ 6FTJ\|1\|w	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	ELECTRON MICROSCOPY	4.7	3818
86	6FTI\|1\|u+ 6FTI\|1\|w	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	ELECTRON MICROSCOPY	4.2	3818
87	6FTG\|1\|u+ 6FTG\|1\|w	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	ELECTRON MICROSCOPY	9.1	3818
88	6R6P\|1\|5+ 6R6P\|1\|8	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	3818
89	7QWS\|1\|5+ 7QWS\|1\|8	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	ELECTRON MICROSCOPY	3.4	3649
90	7NFX\|1\|5+ 7NFX\|1\|8	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	ELECTRON MICROSCOPY	3.2	3649
91	7OBR\|1\|5+ 7OBR\|1\|8	RNC-SRP early complex	ELECTRON MICROSCOPY	2.8	3649
92	7QWQ\|1\|5+ 7QWQ\|1\|8	Ternary complex of ribosome nascent chain with SRP and NAC	ELECTRON MICROSCOPY	2.83	3649
93	7QWR\|1\|5+ 7QWR\|1\|8	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	ELECTRON MICROSCOPY	2.9	3649
94	7A01\|1\|e2+ 7A01\|1\|h2	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.6	3981
95	6ZVK\|1\|e2+ 6ZVK\|1\|h2	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.49	4076
96	7NWI\|1\|5+ 7NWI\|1\|8	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	ELECTRON MICROSCOPY	3.13	3818
97	6GZ3\|1\|A2+ 6GZ3\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	3769
98	6GZ4\|1\|A2+ 6GZ4\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	3769
99	6GZ5\|1\|A2+ 6GZ5\|1\|A3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	3769
100	4UJE\|1\|A2+ 4UJE\|1\|A3	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	ELECTRON MICROSCOPY	6.9	3773
101	4UJC\|1\|A2+ 4UJC\|1\|A3	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	ELECTRON MICROSCOPY	9.5	3773
102	4UJD\|1\|A2+ 4UJD\|1\|A3	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	ELECTRON MICROSCOPY	8.9	3773
103	4D67\|1\|2+ 4D67\|1\|3	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	3773
104	4D5Y\|1\|2+ 4D5Y\|1\|3	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	3773

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_06650.45 Obsolete

Release history

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