NR_20.0_10255.41

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7O7Y\|1\|B7 (rep)	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	Electron microscopy	2.2	120	2021-06-02
2	7OYD\|1\|K	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	Electron microscopy	2.3	119	2022-07-20
3	7O7Z\|1\|B7	5S ribosomal RNA	5S	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	Electron microscopy	2.4	120	2021-06-02
4	8SCB\|1\|7	5S ribosomal RNA	5S_rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Terminating ribosome with SRI-41315	Electron microscopy	2.5	120	2023-12-27
5	8RJB\|1\|u	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	Electron microscopy	2.69243	120	2024-01-24
6	8VVQ\|1\|XA	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets	Electron microscopy	2.7	119	2025-07-30
7	8RJD\|1\|u	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	Electron microscopy	2.78574	120	2024-01-24
8	8B6C\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	Electron microscopy	2.79	120	2023-02-22
9	7UCK\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	Electron microscopy	2.8	120	2022-06-01
10	8BPO\|1\|B1	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	Electron microscopy	2.8	120	2023-07-05
11	7OBR\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	RNC-SRP early complex	Electron microscopy	2.8	120	2021-07-21
12	7QWQ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Ternary complex of ribosome nascent chain with SRP and NAC	Electron microscopy	2.83	120	2022-03-16
13	7ZJW\|1\|L7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome as it decodes the Sec-UGA codon	Electron microscopy	2.8	119	2022-10-19
14	9QQA\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Ternary complex of translating ribosome, NAC and NMT1	Electron microscopy	2.8	120	2025-07-16
15	9BDL\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S ribosome with angiogenin	Electron microscopy	2.8	120	2024-07-24
16	8B5L\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	Electron microscopy	2.86	120	2023-03-01
17	6SGC\|1\|74	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	119	2019-12-04
18	7QWR\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	Electron microscopy	2.9	120	2022-03-09
19	8RJC\|1\|u	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	Electron microscopy	2.90061	120	2024-01-24
20	8P2K\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Ternary complex of translating ribosome, NAC and METAP1	Electron microscopy	2.9	119	2023-07-19
21	7O80\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	Electron microscopy	2.9	119	2021-06-02
22	8VVP\|1\|XA	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Codon sampling state obtained from Anisomycin-treated mammalian ribosomes	Electron microscopy	2.9	119	2025-07-30
23	8VVT\|1\|XA	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian ribosomes bound to Anisomycin in the rotated conformation	Electron microscopy	2.9	120	2025-07-30
24	7TOR\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.9	120	2022-05-25
25	9F1B\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	Electron microscopy	3.01	119	2024-08-21
26	6R5Q\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	120	2019-07-10
27	7ZJX\|1\|L7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome programmed with SECIS and SBP2	Electron microscopy	3.1	120	2022-09-07
28	7O81\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	Electron microscopy	3.1	120	2021-06-02
29	7UCJ\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S translation initiation complex with mRNA and Harringtonine	Electron microscopy	3.1	120	2022-06-01
30	6R6P\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	120	2019-07-10
31	7NWI\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	Electron microscopy	3.13	120	2021-07-07
32	8BHF\|1\|B2	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	Electron microscopy	3.1	119	2023-09-06
33	6P5K\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	119	2019-09-18
34	7TOQ\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	Electron microscopy	3.1	120	2022-05-25
35	8VVV\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian ribosomes bound to Anisomycin in the nonrotated conformation	Electron microscopy	3.1	120	2025-07-30
36	6P5J\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	119	2019-09-18
37	6P5I\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	119	2019-09-18
38	6T59\|1\|74	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	Electron microscopy	3.11	120	2019-11-27
39	9BDN\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S ribosome with angiogenin and tRNAAla	Electron microscopy	3.1	120	2024-07-24
40	7NFX\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	Electron microscopy	3.2	120	2021-06-02
41	8VVR\|1\|XA	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes	Electron microscopy	3.1	119	2025-07-30
42	8VVS\|1\|XA	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes	Electron microscopy	3.1	119	2025-07-30
43	7MDZ\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S rabbit ribosome stalled with benzamide-CHX	Electron microscopy	3.2	119	2021-09-01
44	6P5N\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	119	2019-09-25
45	7TM3\|1\|u	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.25	120	2022-10-19
46	6D9J\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	119	2018-06-06
47	9F1D\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	Electron microscopy	3.26	119	2024-08-21
48	8VFT\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Translating 80S rabbit ribosome stalled by emetine with eEF2	Electron microscopy	3.3	120	2024-12-25
49	5LZV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	120	2016-11-30
50	5LZS\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	119	2016-11-30
51	6MTD\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	120	2018-11-21
52	7QWS\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	Electron microscopy	3.4	120	2022-03-09
53	6ZVK\|1\|d2	5S ribosomal RNA	5S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF00001	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.49	120	2020-12-23
54	6MTE\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	120	2018-11-21
55	9QQB\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	Electron microscopy	3.43	120	2025-07-16
56	5LZZ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	120	2016-11-30
57	6MTC\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	120	2018-11-21
58	5LZW\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	120	2016-11-30
59	8BTK\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the TRAP complex with the Sec translocon and a translating ribosome	Electron microscopy	3.5	119	2023-05-24
60	6D90\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	119	2018-06-06
61	7A01\|1\|d2	5S ribosomal RNA	5S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF00001	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	Electron microscopy	3.6	120	2020-12-30
62	5LZT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	120	2016-11-30
63	6GZ5\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	119	2018-12-05
64	5LZX\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	120	2016-11-30
65	6MTB\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	120	2018-11-21
66	6GZ3\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	119	2018-12-05
67	6FRK\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	Electron microscopy	3.7	120	2018-03-28
68	5LZU\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	120	2016-11-30
69	6R6G\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	Electron microscopy	3.7	120	2019-07-10
70	7NWG\|1\|71	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	Electron microscopy	3.8	120	2021-07-07
71	9F1C\|1\|B7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E	Electron microscopy	3.78	119	2024-08-21
72	9BDP\|1\|A5S	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla	Electron microscopy	3.7	120	2024-07-24
73	6GZ4\|1\|A4	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	119	2018-12-05
74	6HCJ\|1\|71	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	120	2018-10-17
75	3JAH\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	120	2015-08-12
76	7TUT\|1\|u	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	Electron microscopy	3.88	120	2022-10-19
77	6R7Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	Electron microscopy	3.9	120	2019-07-10
78	8VVU\|1\|XA	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA	Electron microscopy	3.8	119	2025-07-30
79	3J92\|1\|7	5S ribosomal RNA	5S rRNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure and assembly pathway of the ribosome quality control complex	Electron microscopy	3.6	120	2015-01-21
80	5LZY\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	120	2016-11-30
81	3JAG\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	120	2015-08-12
82	7NWH\|1\|7	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	Electron microscopy	4.1	120	2021-07-07
83	3JAI\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	120	2015-08-12
84	6HCF\|1\|72	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	120	2018-10-17
85	6FTI\|1\|v	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	Electron microscopy	4.2	120	2018-03-21
86	6FTJ\|1\|v	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	Electron microscopy	4.7	120	2018-03-21
87	6HCQ\|1\|71	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit collided di-ribosome (collided monosome)	Electron microscopy	6.5	120	2018-10-17
88	6HCM\|1\|72	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the rabbit collided di-ribosome (stalled monosome)	Electron microscopy	6.8	120	2018-10-17
89	4UJE\|1\|A4	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	Electron microscopy	6.9	119	2014-07-16
90	3JAN\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	120	2015-08-05
91	3JAJ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	120	2015-08-05
92	6FTG\|1\|v	5S ribosomal RNA	5S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	Electron microscopy	9.1	120	2018-03-21
93	4UJD\|1\|A4	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	Electron microscopy	8.9	119	2014-07-30
94	4D67\|1\|4	5S ribosomal RNA	5S RRNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	119	2015-03-04
95	4D5Y\|1\|4	5S ribosomal RNA	5S Ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF00001	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	Electron microscopy	9	119	2015-03-04
96	4UJC\|1\|A4	5S ribosomal RNA	5S RIBOSOMAL RNA	Oryctolagus cuniculus	Eukarya	RF00001	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	Electron microscopy	9.5	119	2014-07-30

Release history

Release	3.398
Date	2025-07-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	6ZVK\|1\|d2	The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.49	120
2	7A01\|1\|d2	The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism	ELECTRON MICROSCOPY	3.6	120
3	4D67\|1\|4	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	119
4	4D5Y\|1\|4	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state	ELECTRON MICROSCOPY	9	119
5	4UJC\|1\|A4	mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state	ELECTRON MICROSCOPY	9.5	119
6	4UJD\|1\|A4	mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state	ELECTRON MICROSCOPY	8.9	119
7	4UJE\|1\|A4	Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement	ELECTRON MICROSCOPY	6.9	119
8	8VFT\|1\|7	Translating 80S rabbit ribosome stalled by emetine with eEF2	ELECTRON MICROSCOPY	3.3	120
9	3JAN\|1\|7	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	120
10	3JAJ\|1\|7	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	120
11	6P5J\|1\|7	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	119
12	8RJD\|1\|u	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2	ELECTRON MICROSCOPY	2.78574	120
13	8RJC\|1\|u	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1	ELECTRON MICROSCOPY	2.90061	120
14	8RJB\|1\|u	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4	ELECTRON MICROSCOPY	2.69243	120
15	6P5K\|1\|7	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	119
16	6P5I\|1\|7	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	119
17	8SCB\|1\|7	Terminating ribosome with SRI-41315	ELECTRON MICROSCOPY	2.5	120
18	8BHF\|1\|B2	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4	ELECTRON MICROSCOPY	3.1	119
19	7ZJX\|1\|L7	Rabbit 80S ribosome programmed with SECIS and SBP2	ELECTRON MICROSCOPY	3.1	120
20	7O7Y\|1\|B7	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)	ELECTRON MICROSCOPY	2.2	120
21	7O7Z\|1\|B7	Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)	ELECTRON MICROSCOPY	2.4	120
22	7O80\|1\|B7	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site	ELECTRON MICROSCOPY	2.9	119
23	8BTK\|1\|B7	Structure of the TRAP complex with the Sec translocon and a translating ribosome	ELECTRON MICROSCOPY	3.5	119
24	8P2K\|1\|B7	Ternary complex of translating ribosome, NAC and METAP1	ELECTRON MICROSCOPY	2.9	119
25	9F1B\|1\|B7	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E	ELECTRON MICROSCOPY	3.01	119
26	7OYD\|1\|K	Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b	ELECTRON MICROSCOPY	2.3	119
27	7ZJW\|1\|L7	Rabbit 80S ribosome as it decodes the Sec-UGA codon	ELECTRON MICROSCOPY	2.8	119
28	7O81\|1\|B7	Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot	ELECTRON MICROSCOPY	3.1	120
29	9F1D\|1\|B7	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK	ELECTRON MICROSCOPY	3.26	119
30	9F1C\|1\|B7	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E	ELECTRON MICROSCOPY	3.78	119
31	9QQB\|1\|B7	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA	ELECTRON MICROSCOPY	3.43	120
32	9QQA\|1\|B7	Ternary complex of translating ribosome, NAC and NMT1	ELECTRON MICROSCOPY	2.8	120
33	6P5N\|1\|7	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	119
34	7UCJ\|1\|7	Mammalian 80S translation initiation complex with mRNA and Harringtonine	ELECTRON MICROSCOPY	3.1	120
35	7UCK\|1\|7	80S translation initiation complex with ac4c(-1) mRNA and Harringtonine	ELECTRON MICROSCOPY	2.8	120
36	8B5L\|1\|7	Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex	ELECTRON MICROSCOPY	2.86	120
37	8B6C\|1\|7	Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147	ELECTRON MICROSCOPY	2.79	120
38	8BPO\|1\|B1	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)	ELECTRON MICROSCOPY	2.8	120
39	8VVQ\|1\|XA	Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets	ELECTRON MICROSCOPY	2.7	119
40	8VVP\|1\|XA	Codon sampling state obtained from Anisomycin-treated mammalian ribosomes	ELECTRON MICROSCOPY	2.9	119
41	8VVT\|1\|XA	Mammalian ribosomes bound to Anisomycin in the rotated conformation	ELECTRON MICROSCOPY	2.9	120
42	8VVS\|1\|XA	Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes	ELECTRON MICROSCOPY	3.1	119
43	8VVR\|1\|XA	Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes	ELECTRON MICROSCOPY	3.1	119
44	8VVU\|1\|XA	Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA	ELECTRON MICROSCOPY	3.8	119
45	7NFX\|1\|7	Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A	ELECTRON MICROSCOPY	3.2	120
46	7OBR\|1\|7	RNC-SRP early complex	ELECTRON MICROSCOPY	2.8	120
47	8VVV\|1\|7	Mammalian ribosomes bound to Anisomycin in the nonrotated conformation	ELECTRON MICROSCOPY	3.1	120
48	6R6P\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	120
49	7TOQ\|1\|A5S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR	ELECTRON MICROSCOPY	3.1	120
50	6R6G\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	ELECTRON MICROSCOPY	3.7	120
51	6R5Q\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	120
52	7MDZ\|1\|7	80S rabbit ribosome stalled with benzamide-CHX	ELECTRON MICROSCOPY	3.2	119
53	6MTC\|1\|7	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	120
54	6MTB\|1\|7	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	120
55	6MTD\|1\|7	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	120
56	6MTE\|1\|7	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	120
57	7TM3\|1\|u	Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.25	120
58	7TUT\|1\|u	Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon	ELECTRON MICROSCOPY	3.88	120
59	6FRK\|1\|7	Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex	ELECTRON MICROSCOPY	3.7	120
60	3J92\|1\|7	Structure and assembly pathway of the ribosome quality control complex	ELECTRON MICROSCOPY	3.6	120
61	3JAG\|1\|7	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	120
62	3JAH\|1\|7	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	120
63	6FTI\|1\|v	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome	ELECTRON MICROSCOPY	4.2	120
64	6FTG\|1\|v	Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes	ELECTRON MICROSCOPY	9.1	120
65	6FTJ\|1\|v	Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome	ELECTRON MICROSCOPY	4.7	120
66	3JAI\|1\|7	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	120
67	5LZY\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	120
68	5LZZ\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	120
69	5LZX\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	120
70	5LZW\|1\|7	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	120
71	5LZT\|1\|7	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	120
72	5LZU\|1\|7	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	120
73	5LZV\|1\|7	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	120
74	5LZS\|1\|7	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	119
75	6T59\|1\|74	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex	ELECTRON MICROSCOPY	3.11	120
76	9BDN\|1\|A5S	80S ribosome with angiogenin and tRNAAla	ELECTRON MICROSCOPY	3.1	120
77	9BDL\|1\|A5S	80S ribosome with angiogenin	ELECTRON MICROSCOPY	2.8	120
78	6SGC\|1\|74	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	119
79	6R7Q\|1\|7	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	ELECTRON MICROSCOPY	3.9	120
80	9BDP\|1\|A5S	80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla	ELECTRON MICROSCOPY	3.7	120
81	7TOR\|1\|A5S	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.9	120
82	7QWQ\|1\|7	Ternary complex of ribosome nascent chain with SRP and NAC	ELECTRON MICROSCOPY	2.83	120
83	7QWR\|1\|7	Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC	ELECTRON MICROSCOPY	2.9	120
84	7QWS\|1\|7	Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC	ELECTRON MICROSCOPY	3.4	120
85	6GZ3\|1\|A4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	119
86	6GZ5\|1\|A4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	119
87	6GZ4\|1\|A4	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	119
88	7NWH\|1\|7	Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.	ELECTRON MICROSCOPY	4.1	120
89	6D90\|1\|7	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	119
90	7NWI\|1\|7	Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S	ELECTRON MICROSCOPY	3.13	120
91	6D9J\|1\|7	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	119
92	6HCM\|1\|72	Structure of the rabbit collided di-ribosome (stalled monosome)	ELECTRON MICROSCOPY	6.8	120
93	6HCF\|1\|72	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	120
94	7NWG\|1\|71	Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.	ELECTRON MICROSCOPY	3.8	120
95	6HCJ\|1\|71	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	120
96	6HCQ\|1\|71	Structure of the rabbit collided di-ribosome (collided monosome)	ELECTRON MICROSCOPY	6.5	120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_10255.41 Current

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