RNA 3D Hub //

Equivalence class NR_20.0_12406.5 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17SYQ|1|z (rep)Internal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)Electron microscopy3.82642022-07-27
27SYV|1|zInternal ribosome entry siteHCV IREShepatitis C virus genotype 1aVirusesRF00061Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)Electron microscopy3.92582022-07-20
37SYP|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)Electron microscopy42492022-07-27
47SYS|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).Electron microscopy3.51882022-07-27
57SYR|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).Electron microscopy3.61882022-07-27
67SYW|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)Electron microscopy3.71882022-07-13
77SYX|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)Electron microscopy3.71882022-07-13
87SYN|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)Electron microscopy41622022-07-13
97SYT|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)Electron microscopy4.41882022-07-13
107SYK|1|zInternal ribosome entry siteHCV IREShepatitis C virus genotype 1aVirusesRF00061Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)Electron microscopy4.21622022-07-13
117SYU|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)Electron microscopy4.61882022-07-13
127SYG|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)Electron microscopy4.31622022-07-13
137SYL|1|zInternal ribosome entry siteHCV IREShepatitis C virus genotype 1aVirusesRF00061Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)Electron microscopy4.51622022-07-13
147SYO|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)Electron microscopy4.61662022-07-27
157SYH|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)Electron microscopy4.61622022-07-13
167SYM|1|zInternal ribosome entry siteHCV IRESHepatitis C virus (isolate 1)VirusesRF00061Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)Electron microscopy4.81622022-07-13
177SYJ|1|zInternal ribosome entry siteHCV IREShepatitis C virus genotype 1aVirusesRF00061Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)Electron microscopy4.81622022-07-13

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.3923.393
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-182025-06-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17SYQ|1|zStructure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)ELECTRON MICROSCOPY3.8264
27SYP|1|zStructure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)ELECTRON MICROSCOPY4249
37SYV|1|zStructure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)ELECTRON MICROSCOPY3.9258
47SYK|1|zStructure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII)ELECTRON MICROSCOPY4.2162
57SYR|1|zStructure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).ELECTRON MICROSCOPY3.6188
67SYS|1|zStructure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).ELECTRON MICROSCOPY3.5188
77SYU|1|zStructure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)ELECTRON MICROSCOPY4.6188
87SYT|1|zStructure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)ELECTRON MICROSCOPY4.4188
97SYW|1|zStructure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)ELECTRON MICROSCOPY3.7188
107SYX|1|zStructure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)ELECTRON MICROSCOPY3.7188
117SYN|1|zStructure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)ELECTRON MICROSCOPY4162
127SYO|1|zStructure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)ELECTRON MICROSCOPY4.6166
137SYL|1|zStructure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII)ELECTRON MICROSCOPY4.5162
147SYM|1|zStructure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)ELECTRON MICROSCOPY4.8162
157SYJ|1|zStructure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)ELECTRON MICROSCOPY4.8162
167SYH|1|zStructure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)ELECTRON MICROSCOPY4.6162
177SYG|1|zStructure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)ELECTRON MICROSCOPY4.3162

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

7SYQ|1|z:7SYQ|1|z = 07SYQ|1|z:7SYP|1|z = 0.04347SYQ|1|z:7SYV|1|z = 0.07807SYQ|1|z:7SYK|1|z = 0.12247SYQ|1|z:7SYR|1|z = 0.21757SYQ|1|z:7SYS|1|z = 0.21477SYQ|1|z:7SYU|1|z = 0.21787SYQ|1|z:7SYT|1|z = 0.21597SYQ|1|z:7SYW|1|z = 0.21967SYQ|1|z:7SYX|1|z = 0.22657SYQ|1|z:7SYN|1|z = 0.12837SYQ|1|z:7SYO|1|z = 0.14577SYQ|1|z:7SYL|1|z = 0.16087SYQ|1|z:7SYM|1|z = 0.16217SYQ|1|z:7SYJ|1|z = 0.18737SYQ|1|z:7SYH|1|z = 0.23977SYQ|1|z:7SYG|1|z = 0.32867SYP|1|z:7SYQ|1|z = 0.04347SYP|1|z:7SYP|1|z = 07SYP|1|z:7SYV|1|z = 0.04897SYP|1|z:7SYK|1|z = 0.11867SYP|1|z:7SYR|1|z = 0.15737SYP|1|z:7SYS|1|z = 0.15477SYP|1|z:7SYU|1|z = 0.15967SYP|1|z:7SYT|1|z = 0.15577SYP|1|z:7SYW|1|z = 0.16167SYP|1|z:7SYX|1|z = 0.16377SYP|1|z:7SYN|1|z = 0.13137SYP|1|z:7SYO|1|z = 0.14517SYP|1|z:7SYL|1|z = 0.16217SYP|1|z:7SYM|1|z = 0.16427SYP|1|z:7SYJ|1|z = 0.18877SYP|1|z:7SYH|1|z = 0.23897SYP|1|z:7SYG|1|z = 0.32917SYV|1|z:7SYQ|1|z = 0.07807SYV|1|z:7SYP|1|z = 0.04897SYV|1|z:7SYV|1|z = 07SYV|1|z:7SYK|1|z = 0.10927SYV|1|z:7SYR|1|z = 0.15627SYV|1|z:7SYS|1|z = 0.15547SYV|1|z:7SYU|1|z = 0.16297SYV|1|z:7SYT|1|z = 0.15837SYV|1|z:7SYW|1|z = 0.16067SYV|1|z:7SYX|1|z = 0.16937SYV|1|z:7SYN|1|z = 0.13417SYV|1|z:7SYO|1|z = 0.14027SYV|1|z:7SYL|1|z = 0.16117SYV|1|z:7SYM|1|z = 0.15777SYV|1|z:7SYJ|1|z = 0.18157SYV|1|z:7SYH|1|z = 0.23277SYV|1|z:7SYG|1|z = 0.32687SYK|1|z:7SYQ|1|z = 0.12247SYK|1|z:7SYP|1|z = 0.11867SYK|1|z:7SYV|1|z = 0.10927SYK|1|z:7SYK|1|z = 07SYK|1|z:7SYR|1|z = 0.08587SYK|1|z:7SYS|1|z = 0.08727SYK|1|z:7SYU|1|z = 0.09607SYK|1|z:7SYT|1|z = 0.09217SYK|1|z:7SYW|1|z = 0.09467SYK|1|z:7SYX|1|z = 0.10247SYK|1|z:7SYN|1|z = 0.13087SYK|1|z:7SYO|1|z = 0.13457SYK|1|z:7SYL|1|z = 0.14297SYK|1|z:7SYM|1|z = 0.13247SYK|1|z:7SYJ|1|z = 0.15637SYK|1|z:7SYH|1|z = 0.20417SYK|1|z:7SYG|1|z = 0.30667SYR|1|z:7SYQ|1|z = 0.21757SYR|1|z:7SYP|1|z = 0.15737SYR|1|z:7SYV|1|z = 0.15627SYR|1|z:7SYK|1|z = 0.08587SYR|1|z:7SYR|1|z = 07SYR|1|z:7SYS|1|z = 0.04987SYR|1|z:7SYU|1|z = 0.06527SYR|1|z:7SYT|1|z = 0.06227SYR|1|z:7SYW|1|z = 0.07537SYR|1|z:7SYX|1|z = 0.08527SYR|1|z:7SYN|1|z = 0.13807SYR|1|z:7SYO|1|z = 0.14767SYR|1|z:7SYL|1|z = 0.15387SYR|1|z:7SYM|1|z = 0.14277SYR|1|z:7SYJ|1|z = 0.16557SYR|1|z:7SYH|1|z = 0.21817SYR|1|z:7SYG|1|z = 0.32547SYS|1|z:7SYQ|1|z = 0.21477SYS|1|z:7SYP|1|z = 0.15477SYS|1|z:7SYV|1|z = 0.15547SYS|1|z:7SYK|1|z = 0.08727SYS|1|z:7SYR|1|z = 0.04987SYS|1|z:7SYS|1|z = 07SYS|1|z:7SYU|1|z = 0.05707SYS|1|z:7SYT|1|z = 0.05367SYS|1|z:7SYW|1|z = 0.07087SYS|1|z:7SYX|1|z = 0.08597SYS|1|z:7SYN|1|z = 0.13607SYS|1|z:7SYO|1|z = 0.15107SYS|1|z:7SYL|1|z = 0.15417SYS|1|z:7SYM|1|z = 0.14297SYS|1|z:7SYJ|1|z = 0.16887SYS|1|z:7SYH|1|z = 0.21887SYS|1|z:7SYG|1|z = 0.32567SYU|1|z:7SYQ|1|z = 0.21787SYU|1|z:7SYP|1|z = 0.15967SYU|1|z:7SYV|1|z = 0.16297SYU|1|z:7SYK|1|z = 0.09607SYU|1|z:7SYR|1|z = 0.06527SYU|1|z:7SYS|1|z = 0.05707SYU|1|z:7SYU|1|z = 07SYU|1|z:7SYT|1|z = 0.02767SYU|1|z:7SYW|1|z = 0.07807SYU|1|z:7SYX|1|z = 0.09117SYU|1|z:7SYN|1|z = 0.14337SYU|1|z:7SYO|1|z = 0.15387SYU|1|z:7SYL|1|z = 0.15637SYU|1|z:7SYM|1|z = 0.14707SYU|1|z:7SYJ|1|z = 0.17237SYU|1|z:7SYH|1|z = 0.22097SYU|1|z:7SYG|1|z = 0.32667SYT|1|z:7SYQ|1|z = 0.21597SYT|1|z:7SYP|1|z = 0.15577SYT|1|z:7SYV|1|z = 0.15837SYT|1|z:7SYK|1|z = 0.09217SYT|1|z:7SYR|1|z = 0.06227SYT|1|z:7SYS|1|z = 0.05367SYT|1|z:7SYU|1|z = 0.02767SYT|1|z:7SYT|1|z = 07SYT|1|z:7SYW|1|z = 0.07377SYT|1|z:7SYX|1|z = 0.08737SYT|1|z:7SYN|1|z = 0.14027SYT|1|z:7SYO|1|z = 0.15047SYT|1|z:7SYL|1|z = 0.15537SYT|1|z:7SYM|1|z = 0.14237SYT|1|z:7SYJ|1|z = 0.17107SYT|1|z:7SYH|1|z = 0.22027SYT|1|z:7SYG|1|z = 0.32677SYW|1|z:7SYQ|1|z = 0.21967SYW|1|z:7SYP|1|z = 0.16167SYW|1|z:7SYV|1|z = 0.16067SYW|1|z:7SYK|1|z = 0.09467SYW|1|z:7SYR|1|z = 0.07537SYW|1|z:7SYS|1|z = 0.07087SYW|1|z:7SYU|1|z = 0.07807SYW|1|z:7SYT|1|z = 0.07377SYW|1|z:7SYW|1|z = 07SYW|1|z:7SYX|1|z = 0.07287SYW|1|z:7SYN|1|z = 0.14087SYW|1|z:7SYO|1|z = 0.15327SYW|1|z:7SYL|1|z = 0.15677SYW|1|z:7SYM|1|z = 0.14267SYW|1|z:7SYJ|1|z = 0.16567SYW|1|z:7SYH|1|z = 0.21657SYW|1|z:7SYG|1|z = 0.32477SYX|1|z:7SYQ|1|z = 0.22657SYX|1|z:7SYP|1|z = 0.16377SYX|1|z:7SYV|1|z = 0.16937SYX|1|z:7SYK|1|z = 0.10247SYX|1|z:7SYR|1|z = 0.08527SYX|1|z:7SYS|1|z = 0.08597SYX|1|z:7SYU|1|z = 0.09117SYX|1|z:7SYT|1|z = 0.08737SYX|1|z:7SYW|1|z = 0.07287SYX|1|z:7SYX|1|z = 07SYX|1|z:7SYN|1|z = 0.14067SYX|1|z:7SYO|1|z = 0.16027SYX|1|z:7SYL|1|z = 0.15697SYX|1|z:7SYM|1|z = 0.14787SYX|1|z:7SYJ|1|z = 0.17397SYX|1|z:7SYH|1|z = 0.22007SYX|1|z:7SYG|1|z = 0.32087SYN|1|z:7SYQ|1|z = 0.12837SYN|1|z:7SYP|1|z = 0.13137SYN|1|z:7SYV|1|z = 0.13417SYN|1|z:7SYK|1|z = 0.13087SYN|1|z:7SYR|1|z = 0.13807SYN|1|z:7SYS|1|z = 0.13607SYN|1|z:7SYU|1|z = 0.14337SYN|1|z:7SYT|1|z = 0.14027SYN|1|z:7SYW|1|z = 0.14087SYN|1|z:7SYX|1|z = 0.14067SYN|1|z:7SYN|1|z = 07SYN|1|z:7SYO|1|z = 0.10287SYN|1|z:7SYL|1|z = 0.10757SYN|1|z:7SYM|1|z = 0.10747SYN|1|z:7SYJ|1|z = 0.15567SYN|1|z:7SYH|1|z = 0.21577SYN|1|z:7SYG|1|z = 0.32287SYO|1|z:7SYQ|1|z = 0.14577SYO|1|z:7SYP|1|z = 0.14517SYO|1|z:7SYV|1|z = 0.14027SYO|1|z:7SYK|1|z = 0.13457SYO|1|z:7SYR|1|z = 0.14767SYO|1|z:7SYS|1|z = 0.15107SYO|1|z:7SYU|1|z = 0.15387SYO|1|z:7SYT|1|z = 0.15047SYO|1|z:7SYW|1|z = 0.15327SYO|1|z:7SYX|1|z = 0.16027SYO|1|z:7SYN|1|z = 0.10287SYO|1|z:7SYO|1|z = 07SYO|1|z:7SYL|1|z = 0.11127SYO|1|z:7SYM|1|z = 0.11397SYO|1|z:7SYJ|1|z = 0.17117SYO|1|z:7SYH|1|z = 0.22057SYO|1|z:7SYG|1|z = 0.31947SYL|1|z:7SYQ|1|z = 0.16087SYL|1|z:7SYP|1|z = 0.16217SYL|1|z:7SYV|1|z = 0.16117SYL|1|z:7SYK|1|z = 0.14297SYL|1|z:7SYR|1|z = 0.15387SYL|1|z:7SYS|1|z = 0.15417SYL|1|z:7SYU|1|z = 0.15637SYL|1|z:7SYT|1|z = 0.15537SYL|1|z:7SYW|1|z = 0.15677SYL|1|z:7SYX|1|z = 0.15697SYL|1|z:7SYN|1|z = 0.10757SYL|1|z:7SYO|1|z = 0.11127SYL|1|z:7SYL|1|z = 07SYL|1|z:7SYM|1|z = 0.10237SYL|1|z:7SYJ|1|z = 0.17027SYL|1|z:7SYH|1|z = 0.23677SYL|1|z:7SYG|1|z = 0.33807SYM|1|z:7SYQ|1|z = 0.16217SYM|1|z:7SYP|1|z = 0.16427SYM|1|z:7SYV|1|z = 0.15777SYM|1|z:7SYK|1|z = 0.13247SYM|1|z:7SYR|1|z = 0.14277SYM|1|z:7SYS|1|z = 0.14297SYM|1|z:7SYU|1|z = 0.14707SYM|1|z:7SYT|1|z = 0.14237SYM|1|z:7SYW|1|z = 0.14267SYM|1|z:7SYX|1|z = 0.14787SYM|1|z:7SYN|1|z = 0.10747SYM|1|z:7SYO|1|z = 0.11397SYM|1|z:7SYL|1|z = 0.10237SYM|1|z:7SYM|1|z = 07SYM|1|z:7SYJ|1|z = 0.16057SYM|1|z:7SYH|1|z = 0.23227SYM|1|z:7SYG|1|z = 0.33107SYJ|1|z:7SYQ|1|z = 0.18737SYJ|1|z:7SYP|1|z = 0.18877SYJ|1|z:7SYV|1|z = 0.18157SYJ|1|z:7SYK|1|z = 0.15637SYJ|1|z:7SYR|1|z = 0.16557SYJ|1|z:7SYS|1|z = 0.16887SYJ|1|z:7SYU|1|z = 0.17237SYJ|1|z:7SYT|1|z = 0.17107SYJ|1|z:7SYW|1|z = 0.16567SYJ|1|z:7SYX|1|z = 0.17397SYJ|1|z:7SYN|1|z = 0.15567SYJ|1|z:7SYO|1|z = 0.17117SYJ|1|z:7SYL|1|z = 0.17027SYJ|1|z:7SYM|1|z = 0.16057SYJ|1|z:7SYJ|1|z = 07SYJ|1|z:7SYH|1|z = 0.21627SYJ|1|z:7SYG|1|z = 0.32997SYH|1|z:7SYQ|1|z = 0.23977SYH|1|z:7SYP|1|z = 0.23897SYH|1|z:7SYV|1|z = 0.23277SYH|1|z:7SYK|1|z = 0.20417SYH|1|z:7SYR|1|z = 0.21817SYH|1|z:7SYS|1|z = 0.21887SYH|1|z:7SYU|1|z = 0.22097SYH|1|z:7SYT|1|z = 0.22027SYH|1|z:7SYW|1|z = 0.21657SYH|1|z:7SYX|1|z = 0.22007SYH|1|z:7SYN|1|z = 0.21577SYH|1|z:7SYO|1|z = 0.22057SYH|1|z:7SYL|1|z = 0.23677SYH|1|z:7SYM|1|z = 0.23227SYH|1|z:7SYJ|1|z = 0.21627SYH|1|z:7SYH|1|z = 07SYH|1|z:7SYG|1|z = 0.25347SYG|1|z:7SYQ|1|z = 0.32867SYG|1|z:7SYP|1|z = 0.32917SYG|1|z:7SYV|1|z = 0.32687SYG|1|z:7SYK|1|z = 0.30667SYG|1|z:7SYR|1|z = 0.32547SYG|1|z:7SYS|1|z = 0.32567SYG|1|z:7SYU|1|z = 0.32667SYG|1|z:7SYT|1|z = 0.32677SYG|1|z:7SYW|1|z = 0.32477SYG|1|z:7SYX|1|z = 0.32087SYG|1|z:7SYN|1|z = 0.32287SYG|1|z:7SYO|1|z = 0.31947SYG|1|z:7SYL|1|z = 0.33807SYG|1|z:7SYM|1|z = 0.33107SYG|1|z:7SYJ|1|z = 0.32997SYG|1|z:7SYH|1|z = 0.25347SYG|1|z:7SYG|1|z = 07SYQ|1|z7SYP|1|z7SYV|1|z7SYK|1|z7SYR|1|z7SYS|1|z7SYU|1|z7SYT|1|z7SYW|1|z7SYX|1|z7SYN|1|z7SYO|1|z7SYL|1|z7SYM|1|z7SYJ|1|z7SYH|1|z7SYG|1|zDiscrepancy0.000.050.100.150.200.250.30

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