NR_20.0_12763.38

Members (93)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	7QI4\|1\|A (rep)	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome at 2.2 A resolution	Electron microscopy	2.21	1558	2022-07-13
2	8RRI\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with antibiotic tigecycline	Electron microscopy	2.4	1551	2025-03-12
3	7QI5\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution	Electron microscopy	2.63	1558	2023-07-05
4	9OLF\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Membrane-associated human mitoribosome in complex with TACO1	Electron microscopy	2.46	1558	2026-02-18
5	7OF0\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).	Electron microscopy	2.2	1376	2021-06-09
6	8ANY\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA	Electron microscopy	2.85	1558	2023-08-16
7	8K2A\|1\|L1	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome with Tigecycline	Electron microscopy	2.9	1500	2024-07-10
8	7OF6\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).	Electron microscopy	2.6	1463	2021-06-09
9	7OF7\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).	Electron microscopy	2.5	1376	2021-06-23
10	7OF4\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).	Electron microscopy	2.7	1463	2021-06-09
11	7OF2\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.	Electron microscopy	2.7	1410	2021-06-02
12	7QI6\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	Electron microscopy	2.98	1558	2023-05-17
13	9RU6\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs	Electron microscopy	2.64	1557	2026-07-15
14	7OF3\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).	Electron microscopy	2.7	1386	2021-05-19
15	9VXM\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs	Electron microscopy	2.9	1558	2026-07-22
16	9CN3\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human 39S mitoribosome in complex with antibiotic Linezolid	Electron microscopy	2.62	1527	2025-04-23
17	9PR4\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1	Electron microscopy	2.77	1558	2026-02-18
18	9PGL\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A-P state with TACO1	Electron microscopy	2.9	1558	2026-02-18
19	7OF5\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).	Electron microscopy	2.9	1389	2021-06-09
20	9PRA\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu	Electron microscopy	2.83	1558	2026-02-18
21	9PGF\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the P state	Electron microscopy	2.93	1558	2026-02-18
22	9PSM\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A/P-P/E state	Electron microscopy	2.98	1558	2026-02-18
23	8OIT\|1\|B8	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA	Electron microscopy	2.9	1558	2023-06-14
24	9UWH\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	human mitoribosome trapped by retapamulin	Electron microscopy	3	1523	2025-10-29
25	8XT0\|1\|L1	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline	Electron microscopy	3.2	1500	2024-07-10
26	8XT1\|1\|L1	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline	Electron microscopy	3.1	1500	2024-07-10
27	8XT3\|1\|L1	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline	Electron microscopy	3.1	1500	2024-07-10
28	9PGI\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A-P-E state with TACO1	Electron microscopy	3.02	1558	2026-02-18
29	9PG8\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the P-E state	Electron microscopy	3.06	1558	2026-02-18
30	8XT2\|1\|L1	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline	Electron microscopy	3.3	1500	2024-07-10
31	8OIR\|1\|B8	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	55S human mitochondrial ribosome with mtRF1 and P-site tRNA	Electron microscopy	3.1	1558	2023-06-14
32	9PS7\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells	Electron microscopy	3.08	1558	2026-02-18
33	8QSJ\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7	Electron microscopy	3	1418	2023-12-13
34	7ODS\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State B of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	3.1	1445	2021-06-23
35	7ODT\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State C of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	3.1	1453	2021-06-23
36	9PGM\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells	Electron microscopy	3.18	1558	2026-02-18
37	7PO4\|1\|A	Large subunit ribosomal RNA	16SrRNA	Homo sapiens	Mitochondria	RF02541	Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)	Electron microscopy	2.56	1145	2022-06-15
38	7L20\|1\|A	Large subunit ribosomal RNA	16S rRNA mitochondrial	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	Electron microscopy	3.15	1527	2021-05-12
39	9PSI\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells	Electron microscopy	3.12	1558	2026-02-18
40	7QH7\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Eukarya	RF02541	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4	Electron microscopy	2.89	1256	2022-05-18
41	6ZSC\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	1501	2020-09-16
42	9S7C\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)	Electron microscopy	3.2	1558	2026-08-12
43	8K2B\|1\|L1	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosome with Tigecycline	Electron microscopy	3.4	1500	2024-07-10
44	7OIE\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B	Electron microscopy	3.5	1472	2021-09-15
45	9PRX\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells	Electron microscopy	3.23	1558	2026-02-18
46	7OIA\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C	Electron microscopy	3.2	1092	2021-09-15
47	6ZSD\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	Electron microscopy	3.7	1501	2020-09-16
48	9PRQ\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells	Electron microscopy	3.34	1558	2026-02-18
49	9S7E\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)	Electron microscopy	3.1	1558	2026-08-12
50	9PRD\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the P state from TACO1-knockout cells	Electron microscopy	3.31	1558	2026-02-18
51	7A5I\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	Electron microscopy	3.7	1485	2020-12-23
52	7OID\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A	Electron microscopy	3.7	1472	2021-09-15
53	7L08\|1\|A	Large subunit ribosomal RNA	16S RRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	1527	2021-05-12
54	7OI8\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A	Electron microscopy	3.5	1092	2021-09-15
55	7OG4\|1\|XA	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with P/E-tRNA	Electron microscopy	3.8	1498	2021-06-23
56	8PK0\|1\|A	Large subunit ribosomal RNA	16S rRNA + pre-H68-71 segment	Homo sapiens	Mitochondria	RF02541	human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7	Electron microscopy	3.03	1423	2023-12-13
57	7OIB\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D	Electron microscopy	3.3	1092	2021-09-15
58	6ZSG\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	Electron microscopy	4	1501	2020-10-14
59	6ZSA\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	Electron microscopy	4	1501	2020-10-21
60	7QH6\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Eukarya	RF02541	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1	Electron microscopy	3.08	1133	2022-03-02
61	6ZS9\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with ribosome recycling factor	Electron microscopy	4	1501	2020-10-14
62	6VMI\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	1527	2020-08-05
63	6VLZ\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	1527	2020-08-05
64	3J7Y\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the large ribosomal subunit from human mitochondria	Electron microscopy	3.4	1472	2014-10-15
65	9S7D\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)	Electron microscopy	3.6	1558	2026-08-12
66	7OI9\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B	Electron microscopy	3.3	1092	2021-09-15
67	9PS0\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells	Electron microscopy	3.29	1558	2026-02-18
68	3J9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	1472	2015-04-15
69	8QU1\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Eukarya	RF02541	mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1	Electron microscopy	2.74	938	2024-06-26
70	6I9R\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	Electron microscopy	3.9	1501	2020-07-08
71	7OI7\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2	Electron microscopy	3.5	1054	2021-09-15
72	9S7B\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)	Electron microscopy	3.7	1558	2026-08-12
73	6ZSB\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	Electron microscopy	4.5	1501	2020-09-16
74	9SL3\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitoribosome bound to TACO1 (domain 1 ordered), mRNA, A/A-, P/P- and E/E-tRNAs	Electron microscopy	4.05	1557	2026-09-30
75	5OOL\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.06	1441	2017-09-13
76	6NU2\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	3.9	1472	2019-04-17
77	7A5G\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	Electron microscopy	4.33	1503	2020-12-23
78	7A5F\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	Electron microscopy	4.4	1503	2020-12-23
79	5OOM\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.03	1092	2017-09-13
80	6ZSE\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	Electron microscopy	5	1501	2020-09-16
81	6NU3\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	4.4	1472	2019-04-17
82	7OI6\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1	Electron microscopy	5.7	1208	2021-10-13
83	8QU5\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Eukarya	RF02541	mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2	Electron microscopy	2.42	1049	2024-06-26
84	6ZM6\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	1531	2021-01-13
85	6ZM5\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	1534	2021-01-13
86	7ODR\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	State A of the human mitoribosomal large subunit assembly intermediate	Electron microscopy	2.9	1448	2021-06-23
87	7O9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module	Electron microscopy	2.5	1454	2021-06-30
88	7O9K\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu	Electron microscopy	3.1	1436	2021-06-30
89	7OIC\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4	Electron microscopy	3.1	1383	2021-09-15
90	7A5J\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	Electron microscopy	3.1	1492	2020-12-23
91	7A5H\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	Electron microscopy	3.3	1457	2020-12-23
92	7A5K\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	Electron microscopy	3.7	1503	2020-12-23
93	7PD3\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP	Electron microscopy	3.4	1280	2021-11-17

Release history

Release	4.59
Date	2026-09-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	6VMI\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	1527
2	6VLZ\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	1527
3	6NU2\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	3.9	1472
4	6NU3\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	4.4	1472
5	3J7Y\|1\|A	Structure of the large ribosomal subunit from human mitochondria	ELECTRON MICROSCOPY	3.4	1472
6	3J9M\|1\|A	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	1472
7	7A5G\|1\|A3	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	ELECTRON MICROSCOPY	4.33	1503
8	7A5F\|1\|A3	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	ELECTRON MICROSCOPY	4.4	1503
9	7A5I\|1\|A3	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.7	1485
10	7A5K\|1\|A3	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	ELECTRON MICROSCOPY	3.7	1503
11	7A5J\|1\|A	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.1	1492
12	5OOL\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.06	1441
13	7A5H\|1\|A	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	ELECTRON MICROSCOPY	3.3	1457
14	9CN3\|1\|A	Human 39S mitoribosome in complex with antibiotic Linezolid	ELECTRON MICROSCOPY	2.62	1527
15	7L20\|1\|A	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	ELECTRON MICROSCOPY	3.15	1527
16	7L08\|1\|A	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	1527
17	7OIE\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B	ELECTRON MICROSCOPY	3.5	1472
18	7OID\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A	ELECTRON MICROSCOPY	3.7	1472
19	7OIC\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4	ELECTRON MICROSCOPY	3.1	1383
20	8XT0\|1\|L1	Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline	ELECTRON MICROSCOPY	3.2	1500
21	8XT2\|1\|L1	Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline	ELECTRON MICROSCOPY	3.3	1500
22	8K2A\|1\|L1	Cryo-EM structure of the human 55S mitoribosome with Tigecycline	ELECTRON MICROSCOPY	2.9	1500
23	8K2B\|1\|L1	Cryo-EM structure of the human 39S mitoribosome with Tigecycline	ELECTRON MICROSCOPY	3.4	1500
24	8XT3\|1\|L1	Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline	ELECTRON MICROSCOPY	3.1	1500
25	8XT1\|1\|L1	Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline	ELECTRON MICROSCOPY	3.1	1500
26	6ZSE\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	5	1501
27	6ZSB\|1\|XA	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	ELECTRON MICROSCOPY	4.5	1501
28	6ZSG\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	4	1501
29	6ZSA\|1\|XA	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	ELECTRON MICROSCOPY	4	1501
30	6ZSC\|1\|XA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	1501
31	6ZSD\|1\|XA	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	3.7	1501
32	7OG4\|1\|XA	Human mitochondrial ribosome in complex with P/E-tRNA	ELECTRON MICROSCOPY	3.8	1498
33	6ZS9\|1\|XA	Human mitochondrial ribosome in complex with ribosome recycling factor	ELECTRON MICROSCOPY	4	1501
34	6I9R\|1\|A	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	ELECTRON MICROSCOPY	3.9	1501
35	8RRI\|1\|A	Human mitochondrial ribosome in complex with antibiotic tigecycline	ELECTRON MICROSCOPY	2.4	1551
36	6ZM5\|1\|A	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	1534
37	6ZM6\|1\|A	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	1531
38	7QI6\|1\|A	Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution	ELECTRON MICROSCOPY	2.98	1558
39	9UWH\|1\|A	human mitoribosome trapped by retapamulin	ELECTRON MICROSCOPY	3	1523
40	9SL3\|1\|A	Human mitoribosome bound to TACO1 (domain 1 ordered), mRNA, A/A-, P/P- and E/E-tRNAs	ELECTRON MICROSCOPY	4.05	1557
41	9RU6\|1\|A	Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs	ELECTRON MICROSCOPY	2.64	1557
42	7QI5\|1\|A	Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution	ELECTRON MICROSCOPY	2.63	1558
43	8ANY\|1\|A	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA	ELECTRON MICROSCOPY	2.85	1558
44	7QI4\|1\|A	Human mitochondrial ribosome at 2.2 A resolution	ELECTRON MICROSCOPY	2.21	1558
45	9VXM\|1\|A	Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs	ELECTRON MICROSCOPY	2.9	1558
46	8OIT\|1\|B8	39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA	ELECTRON MICROSCOPY	2.9	1558
47	8OIR\|1\|B8	55S human mitochondrial ribosome with mtRF1 and P-site tRNA	ELECTRON MICROSCOPY	3.1	1558
48	9PSM\|1\|A	In situ structure of the human mitoribosome in the A/P-P/E state	ELECTRON MICROSCOPY	2.98	1558
49	9PRA\|1\|A	In Situ Structure of the Human Mitoribosome Large Subunit 39S in Complex with EF-Tu	ELECTRON MICROSCOPY	2.83	1558
50	9PR4\|1\|A	In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1	ELECTRON MICROSCOPY	2.77	1558
51	9OLF\|1\|A	Membrane-associated human mitoribosome in complex with TACO1	ELECTRON MICROSCOPY	2.46	1558
52	9PGL\|1\|A	In situ structure of the human mitoribosome in the A-P state with TACO1	ELECTRON MICROSCOPY	2.9	1558
53	9PGI\|1\|A	In situ structure of the human mitoribosome in the A-P-E state with TACO1	ELECTRON MICROSCOPY	3.02	1558
54	9PGF\|1\|A	In situ structure of the human mitoribosome in the P state	ELECTRON MICROSCOPY	2.93	1558
55	9PG8\|1\|A	In situ structure of the human mitoribosome in the P-E state	ELECTRON MICROSCOPY	3.06	1558
56	9PS7\|1\|A	In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.08	1558
57	9PSI\|1\|A	In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.12	1558
58	9PRX\|1\|A	In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.23	1558
59	9PRD\|1\|A	In situ structure of the human mitoribosome in the P state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.31	1558
60	9PS0\|1\|A	In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.29	1558
61	9PRQ\|1\|A	In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.34	1558
62	9PGM\|1\|A	In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells	ELECTRON MICROSCOPY	3.18	1558
63	9S7D\|1\|A	Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)	ELECTRON MICROSCOPY	3.6	1558
64	9S7B\|1\|A	Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)	ELECTRON MICROSCOPY	3.7	1558
65	9S7E\|1\|A	Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)	ELECTRON MICROSCOPY	3.1	1558
66	9S7C\|1\|A	Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)	ELECTRON MICROSCOPY	3.2	1558
67	7OF6\|1\|A	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).	ELECTRON MICROSCOPY	2.6	1463
68	7OF4\|1\|A	Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).	ELECTRON MICROSCOPY	2.7	1463
69	7OF2\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.	ELECTRON MICROSCOPY	2.7	1410
70	7OF5\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).	ELECTRON MICROSCOPY	2.9	1389
71	7OF7\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).	ELECTRON MICROSCOPY	2.5	1376
72	7ODT\|1\|A	State C of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	3.1	1453
73	8QSJ\|1\|A	Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7	ELECTRON MICROSCOPY	3	1418
74	7QH7\|1\|A	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4	ELECTRON MICROSCOPY	2.89	1256
75	7OF0\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).	ELECTRON MICROSCOPY	2.2	1376
76	7OF3\|1\|A	Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).	ELECTRON MICROSCOPY	2.7	1386
77	7ODR\|1\|A	State A of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	2.9	1448
78	7ODS\|1\|A	State B of the human mitoribosomal large subunit assembly intermediate	ELECTRON MICROSCOPY	3.1	1445
79	7O9M\|1\|A	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module	ELECTRON MICROSCOPY	2.5	1454
80	8PK0\|1\|A	human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7	ELECTRON MICROSCOPY	3.03	1423
81	7O9K\|1\|A	Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu	ELECTRON MICROSCOPY	3.1	1436
82	7PD3\|1\|A	Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP	ELECTRON MICROSCOPY	3.4	1280
83	7QH6\|1\|A	Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1	ELECTRON MICROSCOPY	3.08	1133
84	8QU5\|1\|A	mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2	ELECTRON MICROSCOPY	2.42	1049
85	5OOM\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.03	1092
86	7OI8\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A	ELECTRON MICROSCOPY	3.5	1092
87	7OIA\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C	ELECTRON MICROSCOPY	3.2	1092
88	7OIB\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D	ELECTRON MICROSCOPY	3.3	1092
89	7OI9\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B	ELECTRON MICROSCOPY	3.3	1092
90	7OI7\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2	ELECTRON MICROSCOPY	3.5	1054
91	8QU1\|1\|A	mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1	ELECTRON MICROSCOPY	2.74	938
92	7PO4\|1\|A	Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)	ELECTRON MICROSCOPY	2.56	1145
93	7OI6\|1\|A	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1	ELECTRON MICROSCOPY	5.7	1208

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_12763.38 Current

Release history

Parents

Children