RNA 3D Hub //

Equivalence class NR_20.0_18337.4 Current

Showing 1 to 5 of 5 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
11QZC|1|B (rep)23S rRNAEscherichia coliCoordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeElectron microscopy9202003-11-04
23J0E|1|Aribosomal 23S RNAEscherichia coliModels for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complexElectron microscopy9.9222012-04-25
33J0D|1|Bribosomal 23S RNAEscherichia coliModels for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complexElectron microscopy11.1222012-04-25
41T1O|1|B19-mer fragment of the 23S rRNAEscherichia coliComponents of the control 70S ribosome to provide reference for the RRF binding siteElectron microscopy12192004-06-15
51MVR|1|CHelix 69 of 23S rRNAEscherichia coliDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeElectron microscopy12.8192003-04-01

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 5 of 5 entries
#SViewPDBTitleMethodResolution#NTs
11T1O|1|BComponents of the control 70S ribosome to provide reference for the RRF binding siteELECTRON MICROSCOPY1219
23J0E|1|AModels for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complexELECTRON MICROSCOPY9.922
33J0D|1|BModels for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complexELECTRON MICROSCOPY11.122
41QZC|1|BCoordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY920
51MVR|1|CDecoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S RibosomeELECTRON MICROSCOPY12.819

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

1T1O|1|B:1T1O|1|B = 01T1O|1|B:3J0E|1|A not available1T1O|1|B:3J0D|1|B not available1T1O|1|B:1QZC|1|B not available1T1O|1|B:1MVR|1|C not available3J0E|1|A:1T1O|1|B not available3J0E|1|A:3J0E|1|A = 03J0E|1|A:3J0D|1|B = 0.00023J0E|1|A:1QZC|1|B not available3J0E|1|A:1MVR|1|C not available3J0D|1|B:1T1O|1|B not available3J0D|1|B:3J0E|1|A = 0.00023J0D|1|B:3J0D|1|B = 03J0D|1|B:1QZC|1|B not available3J0D|1|B:1MVR|1|C not available1QZC|1|B:1T1O|1|B not available1QZC|1|B:3J0E|1|A not available1QZC|1|B:3J0D|1|B not available1QZC|1|B:1QZC|1|B = 01QZC|1|B:1MVR|1|C not available1MVR|1|C:1T1O|1|B not available1MVR|1|C:3J0E|1|A not available1MVR|1|C:3J0D|1|B not available1MVR|1|C:1QZC|1|B not available1MVR|1|C:1MVR|1|C = 01T1O|1|B3J0E|1|A3J0D|1|B1QZC|1|B1MVR|1|CDiscrepancy0.000.000.000.000.00

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