RNA 3D Hub //

Equivalence class NR_20.0_29643.1 Current

Showing 1 to 3 of 3 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17UTN|1|C+ 7UTN|1|A+ 7UTN|1|B (rep)DNA non-target strand, DNA target strand, RNA (222-MER)synthetic constructIscB and wRNA bound to Target DNAElectron microscopy2.742282022-06-15
28CSZ|1|C+ 8CSZ|1|B+ 8CSZ|1|EDNA non-target strand, DNA target strand, RNA (222-MER)synthetic constructIscB and wRNA bound to Target DNAElectron microscopy3.22362022-06-15
38CTL|1|C+ 8CTL|1|A+ 8CTL|1|BDNA non-target strand, DNA target strand, RNA (222-MER)synthetic constructIscB and wRNA bound to Target DNA (locked state)Electron microscopy3.12332022-06-15

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.392
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-18

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 3 of 3 entries
#SViewPDBTitleMethodResolution#NTs
18CSZ|1|C+ 8CSZ|1|B+ 8CSZ|1|EIscB and wRNA bound to Target DNAELECTRON MICROSCOPY3.2236
27UTN|1|C+ 7UTN|1|A+ 7UTN|1|BIscB and wRNA bound to Target DNAELECTRON MICROSCOPY2.74228
38CTL|1|C+ 8CTL|1|A+ 8CTL|1|BIscB and wRNA bound to Target DNA (locked state)ELECTRON MICROSCOPY3.1233

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

8CSZ|1|C+8CSZ|1|B+8CSZ|1|E:8CSZ|1|C+8CSZ|1|B+8CSZ|1|E = 08CSZ|1|C+8CSZ|1|B+8CSZ|1|E:7UTN|1|C+7UTN|1|A+7UTN|1|B = 0.04048CSZ|1|C+8CSZ|1|B+8CSZ|1|E:8CTL|1|C+8CTL|1|A+8CTL|1|B = 0.08747UTN|1|C+7UTN|1|A+7UTN|1|B:8CSZ|1|C+8CSZ|1|B+8CSZ|1|E = 0.04047UTN|1|C+7UTN|1|A+7UTN|1|B:7UTN|1|C+7UTN|1|A+7UTN|1|B = 07UTN|1|C+7UTN|1|A+7UTN|1|B:8CTL|1|C+8CTL|1|A+8CTL|1|B = 0.07998CTL|1|C+8CTL|1|A+8CTL|1|B:8CSZ|1|C+8CSZ|1|B+8CSZ|1|E = 0.08748CTL|1|C+8CTL|1|A+8CTL|1|B:7UTN|1|C+7UTN|1|A+7UTN|1|B = 0.07998CTL|1|C+8CTL|1|A+8CTL|1|B:8CTL|1|C+8CTL|1|A+8CTL|1|B = 08CSZ|1|C+8CSZ|1|B+8CSZ|1|E7UTN|1|C+7UTN|1|A+7UTN|1|B8CTL|1|C+8CTL|1|A+8CTL|1|BDiscrepancy0.000.020.040.060.08

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