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Equivalence class NR_20.0_37403.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18SYI|1|R (rep)RNA (5'-R(P*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructCyanobacterial RNAP-ECElectron microscopy2.94172023-07-05
28URW|1|RRNA (5'-R(P*AP*AP*AP*GP*AP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructCyanobacterial RNA polymerase elongation complex with NusG and CTPElectron microscopy2.79142023-12-27
38EOS|1|RRNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructM. tuberculosis RNAP elongation complex with NusG and CMPCPPElectron microscopy3.1132023-02-01
48EOT|1|RRNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructM. tuberculosis RNAP elongation complex with NusGElectron microscopy3.3132023-02-01
58E95|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructMycobacterium tuberculosis RNAP elongation complexElectron microscopy2.9102023-03-22
66J9E|1|IRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructCryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7Electron microscopy3.41122019-07-17
78E82|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructMycobacterium tuberculosis RNAP elongation complex with NusG transcription factorElectron microscopy3.03102023-03-22
86M6C|1|RRNAThermus thermophilusCryoEM structure of Thermus thermophilus RNA polymerase elongation complexElectron microscopy3.1102020-10-14
96X50|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - V stateElectron microscopy3.392021-02-03
106C6T|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.5102018-07-25
116J9F|1|IRNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructCryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7Electron microscopy3.95122019-07-17
126X4Y|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - IV stateElectron microscopy3.6102021-02-03
136X43|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - II stateElectron microscopy3.6102021-02-03
146C6U|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGElectron microscopy3.7102018-07-25
156C6S|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.7102018-07-25
166X4W|1|RRNA (20-mer)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - III stateElectron microscopy3.892021-02-03
176X2N|1|RRNA (20-MER)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - I stateElectron microscopy3.992021-02-03
186X2F|1|RRNA (20-MER)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - L2 stateElectron microscopy492021-02-03
196X26|1|RRNA (20-MER)Escherichia coliMfd-bound E.coli RNA polymerase elongation complex - L1 stateElectron microscopy4.192021-02-03
206ALH|1|RRNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia virus T7CryoEM structure of E.coli RNA polymerase elongation complexElectron microscopy4.4102017-08-16

Release history

Release3.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18E82|1|RMycobacterium tuberculosis RNAP elongation complex with NusG transcription factorELECTRON MICROSCOPY3.0310
28E95|1|RMycobacterium tuberculosis RNAP elongation complexELECTRON MICROSCOPY2.910
36X50|1|RMfd-bound E.coli RNA polymerase elongation complex - V stateELECTRON MICROSCOPY3.39
46C6S|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.710
56C6T|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.510
66C6U|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGELECTRON MICROSCOPY3.710
76X2N|1|RMfd-bound E.coli RNA polymerase elongation complex - I stateELECTRON MICROSCOPY3.99
86M6C|1|RCryoEM structure of Thermus thermophilus RNA polymerase elongation complexELECTRON MICROSCOPY3.110
96X2F|1|RMfd-bound E.coli RNA polymerase elongation complex - L2 stateELECTRON MICROSCOPY49
108URW|1|RCyanobacterial RNA polymerase elongation complex with NusG and CTPELECTRON MICROSCOPY2.7914
116X43|1|RMfd-bound E.coli RNA polymerase elongation complex - II stateELECTRON MICROSCOPY3.610
126X26|1|RMfd-bound E.coli RNA polymerase elongation complex - L1 stateELECTRON MICROSCOPY4.19
136ALH|1|RCryoEM structure of E.coli RNA polymerase elongation complexELECTRON MICROSCOPY4.410
148SYI|1|RCyanobacterial RNAP-ECELECTRON MICROSCOPY2.9417
156J9F|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7ELECTRON MICROSCOPY3.9512
166J9E|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7ELECTRON MICROSCOPY3.4112
176X4W|1|RMfd-bound E.coli RNA polymerase elongation complex - III stateELECTRON MICROSCOPY3.89
186X4Y|1|RMfd-bound E.coli RNA polymerase elongation complex - IV stateELECTRON MICROSCOPY3.610
198EOS|1|RM. tuberculosis RNAP elongation complex with NusG and CMPCPPELECTRON MICROSCOPY3.113
208EOT|1|RM. tuberculosis RNAP elongation complex with NusGELECTRON MICROSCOPY3.313

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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