NR_20.0_38286.2

Members (17)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	7DCO\|1\|B (rep)	U5 spliceosomal RNA	pre-mRNA, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom	Electron microscopy	2.5	2021-03-17
2	7B9V\|1\|5	U5 spliceosomal RNA	5' exon of UBC4 mRNA, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound	Electron microscopy	2.8	2021-03-10
3	6J6G\|1\|D	U5 spliceosomal RNA	ACT1 pre-mRNA, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom	Electron microscopy	3.2	2019-04-24
4	6BK8\|1\|5	U5 spliceosomal RNA	RNA (34-MER), U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	S. cerevisiae spliceosomal post-catalytic P complex	Electron microscopy	3.3	2018-02-21
5	5GMK\|1\|D	U5 spliceosomal RNA	5'-Exon, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution	Electron microscopy	3.4	2016-08-17
6	5GM6\|1\|D	U5 spliceosomal RNA	Saccharomyces cerevisiae strain CDRDR_sf_H chromosome VII sequence	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution	Electron microscopy	3.5	2016-09-21
7	5Y88\|1\|B	U5 spliceosomal RNA	U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom	Electron microscopy	3.46	2018-08-01
8	6EXN\|1\|5	U5 spliceosomal RNA	Ligated exons: UBC4 mRNA, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Post-catalytic P complex spliceosome with 3' splice site docked	Electron microscopy	3.7	2018-01-17
9	5YLZ\|1\|B	U5 spliceosomal RNA	mRNA/intron lariat, U2 snRNA, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom	Electron microscopy	3.6	2018-07-18
10	6J6H\|1\|D	U5 spliceosomal RNA	ACT1 pre-mRNA, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom	Electron microscopy	3.6	2019-04-24
11	5LJ3\|1\|U	U5 spliceosomal RNA	Exon 1 (5' exon) of UBC4 pre-mRNA, U5 snRNA (small nuclear RNA)	Saccharomyces cerevisiae	Eukarya	RF00020	Structure of the core of the yeast spliceosome immediately after branching	Electron microscopy	3.8	2016-08-03
12	5MPS\|1\|5	U5 spliceosomal RNA	U5 snRNA, UBC4 gene exon	Saccharomyces cerevisiae	Eukarya	RF00020	Structure of a spliceosome remodeled for exon ligation	Electron microscopy	3.85	2017-01-18
13	6J6N\|1\|D	U5 spliceosomal RNA	U5 snRNA, UBC4 pre-mRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom	Electron microscopy	3.86	2019-04-24
14	6J6Q\|1\|D	U5 spliceosomal RNA	U5 snRNA, UBC4 pre-mRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom	Electron microscopy	3.7	2019-04-24
15	5WSG\|1\|D	U5 spliceosomal RNA	5'-exon, U5 snRNA	Saccharomyces cerevisiae	Eukarya	RF00020	Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution	Electron microscopy	4	2017-01-25
16	5MQ0\|1\|5	U5 spliceosomal RNA	5'-EXON OF UBC4 PRE-MRNA, Saccharomyces cerevisiae strain WI_C_MBSP_4 chromosome VII sequence	Saccharomyces cerevisiae	Eukarya	RF00020	Structure of a spliceosome remodeled for exon ligation	Electron microscopy	4.17	2017-01-18
17	5LJ5\|1\|U	U5 spliceosomal RNA	Exon 1 (5' exon) of UBC4 pre-mRNA, U5 snRNA (small nuclear RNA)	Saccharomyces cerevisiae	Eukarya	RF00020	Overall structure of the yeast spliceosome immediately after branching.	Electron microscopy	10	2016-08-31

Release history

Release	3.344	3.345	3.346	3.347	3.348	3.349	3.350	3.351	3.352	3.353	3.354	3.355	3.356	3.357	3.358	3.359	3.360
Date	2024-07-17	2024-07-25	2024-07-31	2024-08-07	2024-08-14	2024-08-21	2024-08-28	2024-09-04	2024-09-11	2024-09-18	2024-09-25	2024-10-02	2024-10-09	2024-10-16	2024-10-23	2024-10-30	2024-11-06

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	Length
1		5MPS\|1\|5	Structure of a spliceosome remodeled for exon ligation	ELECTRON MICROSCOPY	3.85	141
2		5MQ0\|1\|5	Structure of a spliceosome remodeled for exon ligation	ELECTRON MICROSCOPY	4.17	141
3		5LJ3\|1\|U	Structure of the core of the yeast spliceosome immediately after branching	ELECTRON MICROSCOPY	3.8	141
4		5LJ5\|1\|U	Overall structure of the yeast spliceosome immediately after branching.	ELECTRON MICROSCOPY	10	141
5		5GM6\|1\|D	Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution	ELECTRON MICROSCOPY	3.5	117
6		5Y88\|1\|B	Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom	ELECTRON MICROSCOPY	3.46	117
7		5GMK\|1\|D	Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution	ELECTRON MICROSCOPY	3.4	117
8		5WSG\|1\|D	Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution	ELECTRON MICROSCOPY	4	117
9		5YLZ\|1\|B	Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom	ELECTRON MICROSCOPY	3.6	117
10		6BK8\|1\|5	S. cerevisiae spliceosomal post-catalytic P complex	ELECTRON MICROSCOPY	3.3	103
11		6J6H\|1\|D	Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom	ELECTRON MICROSCOPY	3.6	179
12		6J6G\|1\|D	Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom	ELECTRON MICROSCOPY	3.2	179
13		6J6N\|1\|D	Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom	ELECTRON MICROSCOPY	3.86	179
14		6J6Q\|1\|D	Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom	ELECTRON MICROSCOPY	3.7	179
15		7B9V\|1\|5	Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 bound	ELECTRON MICROSCOPY	2.8	178
16		6EXN\|1\|5	Post-catalytic P complex spliceosome with 3' splice site docked	ELECTRON MICROSCOPY	3.7	171
17		7DCO\|1\|B	Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom	ELECTRON MICROSCOPY	2.5	179

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

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