RNA 3D Hub //

Equivalence class NR_20.0_39715.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19OZ9|1|2 (rep)Small subunit ribosomal RNA16S rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae 70S initiation complex with Shine-Dalgarno-less mRNA.Electron microscopy2.614812026-04-15
29OZZ|1|2Small subunit ribosomal RNA16S rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.Electron microscopy2.514812026-04-15
39OZN|1|2Small subunit ribosomal RNA16S rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 1.Electron microscopy2.714812026-04-15
49P0E|1|2Small subunit ribosomal RNA16S rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.Electron microscopy2.814812026-04-15
59OY8|1|2Small subunit ribosomal RNA16 rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae 30S ribosomal subunit.Electron microscopy2.714812026-04-15
69ZCD|1|2Small subunit ribosomal RNA16S rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae 30S ribosomal subunit.Electron microscopy2.714812026-04-15
77JIL|1|2Small subunit ribosomal RNARNA (1519-MER)Flavobacterium johnsoniaeBacteriaRF0017770S ribosome Flavobacterium johnsoniaeElectron microscopy2.814752020-12-02
89OYV|1|2Small subunit ribosomal RNA16S rRNAFlavobacterium johnsoniaeBacteriaRF00177Flavobacterium johnsoniae 30S ribosomal subunit, ZAM64 mutant.Electron microscopy2.714702026-04-15

Release history

Release4.35
Date2026-04-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19OYV|1|2Flavobacterium johnsoniae 30S ribosomal subunit, ZAM64 mutant.ELECTRON MICROSCOPY2.71470
29OY8|1|2Flavobacterium johnsoniae 30S ribosomal subunit.ELECTRON MICROSCOPY2.71481
39ZCD|1|2Flavobacterium johnsoniae 30S ribosomal subunit.ELECTRON MICROSCOPY2.71481
47JIL|1|270S ribosome Flavobacterium johnsoniaeELECTRON MICROSCOPY2.81475
59OZ9|1|2Flavobacterium johnsoniae 70S initiation complex with Shine-Dalgarno-less mRNA.ELECTRON MICROSCOPY2.61481
69OZN|1|2Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 1.ELECTRON MICROSCOPY2.71481
79OZZ|1|2Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.ELECTRON MICROSCOPY2.51481
89P0E|1|2Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.ELECTRON MICROSCOPY2.81481

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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