RNA 3D Hub //

Equivalence class NR_20.0_40050.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
18R60|1|E (rep)RNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptideElectron microscopy3.2382024-03-27
27NI0|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer - Replicase (class 3)Electron microscopy3.3282021-12-01
37NHC|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease ordered (Class2b)Electron microscopy2.8782021-12-01
47NHX|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer - full transcriptase (Class1)Electron microscopy3.2382021-12-01
57NHA|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease and priming loop ordered (Class2a)Electron microscopy2.9182021-12-01
67NKA|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer with Nb8206Electron microscopy4.0782021-12-01
77NKC|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer with Nb8207Electron microscopy4.4682021-12-01
88R65|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptide with ordered PB2 C-terminal domainsElectron microscopy4.2382024-03-27
97NJ7|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8200 coreElectron microscopy4.8282021-12-01
107NJ5|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8199 coreElectron microscopy4.6382021-12-01
117NKI|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8209 coreElectron microscopy4.6782021-12-01
127NKR|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer with Nb8210Electron microscopy5.682021-12-01
137NK2|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8202 coreElectron microscopy4.8482021-12-01
147NK1|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 Influenza virus polymerase heterotirmer in complex with vRNA promoters and Nb8201Electron microscopy4.2282021-12-01
157NJ3|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8196 coreElectron microscopy4.4882021-12-01
167NK8|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer with Nb8205 coreElectron microscopy5.3482021-12-01
177NK4|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8203 coreElectron microscopy5.3282021-12-01
187NIL|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8190 coreElectron microscopy5.0182021-12-01
197NIK|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8189 coreElectron microscopy6.282021-12-01
207NJ4|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8198 coreElectron microscopy5.8482021-12-01
217NIR|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8191 coreElectron microscopy6.782021-12-01
227NK6|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')synthetic construct1918 H1N1 Viral influenza polymerase heterotrimer with Nb8204Electron microscopy6.7282021-12-01
237NIS|1|ERNA (5'-R(P*GP*GP*CP*CP*UP*GP*CP*U)-3')Influenza A virus (A/Brevig Mission/1/1918(H1N1))1918 H1N1 Viral influenza polymerase heterotrimer with Nb8192 coreElectron microscopy5.9682021-12-01

Release history

Release4.0
Date2025-08-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17NHC|1|E1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease ordered (Class2b)ELECTRON MICROSCOPY2.878
27NK4|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8203 coreELECTRON MICROSCOPY5.328
37NKR|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8210ELECTRON MICROSCOPY5.68
47NKC|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8207ELECTRON MICROSCOPY4.468
57NK1|1|E1918 Influenza virus polymerase heterotirmer in complex with vRNA promoters and Nb8201ELECTRON MICROSCOPY4.228
67NJ7|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8200 coreELECTRON MICROSCOPY4.828
77NKA|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8206ELECTRON MICROSCOPY4.078
87NJ4|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8198 coreELECTRON MICROSCOPY5.848
97NIS|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8192 coreELECTRON MICROSCOPY5.968
107NJ3|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8196 coreELECTRON MICROSCOPY4.488
117NK6|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8204ELECTRON MICROSCOPY6.728
127NIK|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8189 coreELECTRON MICROSCOPY6.28
137NK8|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8205 coreELECTRON MICROSCOPY5.348
147NK2|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8202 coreELECTRON MICROSCOPY4.848
157NIR|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8191 coreELECTRON MICROSCOPY6.78
167NHA|1|E1918 H1N1 Viral influenza polymerase heterotrimer - Endonuclease and priming loop ordered (Class2a)ELECTRON MICROSCOPY2.918
177NJ5|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8199 coreELECTRON MICROSCOPY4.638
187NIL|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8190 coreELECTRON MICROSCOPY5.018
197NKI|1|E1918 H1N1 Viral influenza polymerase heterotrimer with Nb8209 coreELECTRON MICROSCOPY4.678
207NHX|1|E1918 H1N1 Viral influenza polymerase heterotrimer - full transcriptase (Class1)ELECTRON MICROSCOPY3.238
217NI0|1|E1918 H1N1 Viral influenza polymerase heterotrimer - Replicase (class 3)ELECTRON MICROSCOPY3.328
228R65|1|E1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptide with ordered PB2 C-terminal domainsELECTRON MICROSCOPY4.238
238R60|1|E1918 H1N1 Viral polymerase heterotrimer in complex with 4 repeat serine-5 phosphorylated PolII peptideELECTRON MICROSCOPY3.238

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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