RNA 3D Hub //

Equivalence class NR_20.0_43481.5 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17UW1|1|a (rep)Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii 70S ribosome-Streptothricin-D complexElectron microscopy2.2115282023-04-19
27UVZ|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNAElectron microscopy2.2115282023-04-19
37UVX|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii 70S ribosome-Streptothricin-F complexElectron microscopy2.3515282023-04-19
47UVW|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome: 70S with E-site tRNAElectron microscopy2.3715282023-04-19
57RYG|1|aSmall subunit ribosomal RNA16S Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70SElectron microscopy2.3815282022-02-02
67UVY|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNAElectron microscopy2.3915282023-04-19
77RYH|1|aSmall subunit ribosomal RNA16S Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-TP-6076 complex: Empty 70SElectron microscopy2.4315282022-02-02
87UVV|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNAElectron microscopy2.515282023-04-19
97M4Y|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAElectron microscopy2.515282021-05-19
107M4W|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S EmptyElectron microscopy2.5515282021-05-19
117RYF|1|aSmall subunit ribosomal RNA16S Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70SElectron microscopy2.6515282022-02-02
127M4X|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNAElectron microscopy2.6615282021-05-19
137M4U|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 30SElectron microscopy2.7115282021-05-19
146V3A|1|sN1Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNAElectron microscopy2.8215282020-02-05
156V3B|1|sN1Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty stateElectron microscopy2.9115282020-02-05
167M4Z|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with hpfElectron microscopy2.9215282021-05-19
176V39|1|sN1Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNAElectron microscopy3.0415282020-02-05
186YT9|1|2+ 6YT9|1|4Small subunit ribosomal RNA + Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177 + RF00177Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit bodyElectron microscopy2.710402020-09-16
196YPU|1|2+ 6YPU|1|4Small subunit ribosomal RNA + Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177 + RF00177Acinetobacter baumannii ribosome-amikacin complex - 30S subunit bodyElectron microscopy2.910402020-09-16
206V3E|1|sN1Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunitElectron microscopy4.415282020-02-05
216YS5|1|3Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-amikacin complex - 30S subunit headElectron microscopy34532020-09-16
226YTF|1|3Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit headElectron microscopy34532020-09-16

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.390
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-04

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16V3E|1|sN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunitELECTRON MICROSCOPY4.41528
26V3B|1|sN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty stateELECTRON MICROSCOPY2.911528
36V3A|1|sN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNAELECTRON MICROSCOPY2.821528
47RYG|1|aA. baumannii Ribosome-TP-6076 complex: E-site tRNA 70SELECTRON MICROSCOPY2.381528
57UVW|1|aA. baumannii ribosome: 70S with E-site tRNAELECTRON MICROSCOPY2.371528
67UVZ|1|aA. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNAELECTRON MICROSCOPY2.211528
77M4Y|1|aA. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAELECTRON MICROSCOPY2.51528
86YPU|1|2+ 6YPU|1|4Acinetobacter baumannii ribosome-amikacin complex - 30S subunit bodyELECTRON MICROSCOPY2.91040
97RYH|1|aA. baumannii Ribosome-TP-6076 complex: Empty 70SELECTRON MICROSCOPY2.431528
107UVX|1|aA. baumannii 70S ribosome-Streptothricin-F complexELECTRON MICROSCOPY2.351528
117M4W|1|aA. baumannii Ribosome-Eravacycline complex: 70S EmptyELECTRON MICROSCOPY2.551528
127M4U|1|aA. baumannii Ribosome-Eravacycline complex: 30SELECTRON MICROSCOPY2.711528
136YT9|1|2+ 6YT9|1|4Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit bodyELECTRON MICROSCOPY2.71040
146V39|1|sN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNAELECTRON MICROSCOPY3.041528
157RYF|1|aA. baumannii Ribosome-TP-6076 complex: P-site tRNA 70SELECTRON MICROSCOPY2.651528
167UVV|1|aA. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNAELECTRON MICROSCOPY2.51528
177UVY|1|aA. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNAELECTRON MICROSCOPY2.391528
187M4Z|1|aA. baumannii Ribosome-Eravacycline complex: 70S with hpfELECTRON MICROSCOPY2.921528
197M4X|1|aA. baumannii Ribosome-Eravacycline complex: 70S with P-tRNAELECTRON MICROSCOPY2.661528
207UW1|1|aA. baumannii 70S ribosome-Streptothricin-D complexELECTRON MICROSCOPY2.211528
216YS5|1|3Acinetobacter baumannii ribosome-amikacin complex - 30S subunit headELECTRON MICROSCOPY3453
226YTF|1|3Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit headELECTRON MICROSCOPY3453

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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