Equivalence class NR_20.0_44974.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9SRE|1|3 (rep) | 5S ribosomal RNA | rRNA 5S | Pyrococcus abyssi GE5 | Archaea | RF00001 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA) | Electron microscopy | 2.11 | 126 | 2026-07-22 |
| 2 | 9SRD|1|3 | 5S ribosomal RNA | rRNA 5S | Pyrococcus abyssi GE5 | Archaea | RF00001 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) | Electron microscopy | 2.1 | 126 | 2026-05-13 |
| 3 | 9T7H|1|3 | 5S ribosomal RNA | rRNA 5S | Pyrococcus abyssi GE5 | Archaea | RF00001 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation) | Electron microscopy | 2.1 | 126 | 2026-07-22 |
| 4 | 9SRC|1|3 | 5S ribosomal RNA | rRNA 5S | Pyrococcus abyssi GE5 | Archaea | RF00001 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation | Electron microscopy | 2.1 | 126 | 2026-07-22 |
| 5 | 9SRB|1|3 | 5S ribosomal RNA | rRNA 5S | Pyrococcus abyssi GE5 | Archaea | RF00001 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS | Electron microscopy | 2.3 | 126 | 2026-07-22 |
| 6 | 9SRA|1|3 | 5S ribosomal RNA | rRNA 5S | Pyrococcus abyssi GE5 | Archaea | RF00001 | Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex | Electron microscopy | 2.2 | 126 | 2026-07-22 |
Release history
| Release | 4.49 |
|---|---|
| Date | 2026-07-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9SRA|1|3 | Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex | ELECTRON MICROSCOPY | 2.2 | 126 | |
| 2 | 9SRE|1|3 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA) | ELECTRON MICROSCOPY | 2.11 | 126 | |
| 3 | 9SRC|1|3 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation | ELECTRON MICROSCOPY | 2.1 | 126 | |
| 4 | 9SRD|1|3 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation) | ELECTRON MICROSCOPY | 2.1 | 126 | |
| 5 | 9T7H|1|3 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation) | ELECTRON MICROSCOPY | 2.1 | 126 | |
| 6 | 9SRB|1|3 | Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS | ELECTRON MICROSCOPY | 2.3 | 126 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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