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Equivalence class NR_20.0_50642.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19V7S|1|C+ 9V7S|1|B (rep)DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNAElectron microscopy2.5332026-04-15
29V7S|1|c+ 9V7S|1|bDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNAElectron microscopy2.5322026-04-15
39V8A|1|C+ 9V8A|1|BDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobiota bacterium in complex with guide DNA and target RNA in dimeric state.Electron microscopy2.66332026-04-15
49V93|1|c+ 9V93|1|bDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in monomeric state.Electron microscopy2.81322026-04-15
59V8A|1|c+ 9V8A|1|bDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobiota bacterium in complex with guide DNA and target RNA in dimeric state.Electron microscopy2.66322026-04-15
69V9G|1|C+ 9V9G|1|BDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in monomeric state.Electron microscopy2.89342026-04-15
79V9I|1|C+ 9V9I|1|BDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumThe transition-state structure of the Argonaute protein from a Verrucomicrobia bacterium in complex with guide DNA and target RNA.Electron microscopy2.93332026-04-15
85UX0|1|B+ 5UX0|1|CDNA (5'-D(P*AP*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*CP*C)-3'), RNA (5'-R(*G*GP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*AP*U)-3')synthetic constructX-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNAX-ray diffraction3.2402017-05-03
95UX0|1|E+ 5UX0|1|FDNA (5'-D(P*AP*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*CP*C)-3'), RNA (5'-R(*G*GP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*AP*U)-3')synthetic constructX-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNAX-ray diffraction3.2342017-05-03
109V7Z|1|C+ 9V7Z|1|BDNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3')Verrucomicrobiota bacteriumStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in target-released stateElectron microscopy2.97232026-04-15

Release history

Release4.35
Date2026-04-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
19V7S|1|c+ 9V7S|1|bStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNAELECTRON MICROSCOPY2.532
29V7S|1|C+ 9V7S|1|BStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNAELECTRON MICROSCOPY2.533
39V9G|1|C+ 9V9G|1|BStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in monomeric state.ELECTRON MICROSCOPY2.8934
49V93|1|c+ 9V93|1|bStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in monomeric state.ELECTRON MICROSCOPY2.8132
59V8A|1|c+ 9V8A|1|bStructure of the Argonaute protein from Verrucomicrobiota bacterium in complex with guide DNA and target RNA in dimeric state.ELECTRON MICROSCOPY2.6632
69V8A|1|C+ 9V8A|1|BStructure of the Argonaute protein from Verrucomicrobiota bacterium in complex with guide DNA and target RNA in dimeric state.ELECTRON MICROSCOPY2.6633
79V9I|1|C+ 9V9I|1|BThe transition-state structure of the Argonaute protein from a Verrucomicrobia bacterium in complex with guide DNA and target RNA.ELECTRON MICROSCOPY2.9333
89V7Z|1|C+ 9V7Z|1|BStructure of the Argonaute protein from Verrucomicrobia bacterium in complex with guide DNA and target RNA in target-released stateELECTRON MICROSCOPY2.9723
95UX0|1|B+ 5UX0|1|CX-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNAX-RAY DIFFRACTION3.240
105UX0|1|E+ 5UX0|1|FX-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNAX-RAY DIFFRACTION3.234

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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