Equivalence class NR_20.0_51862.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4TZZ|1|H (rep) | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 2 | 4TZZ|1|E | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 3 | 4TZZ|1|B | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 4 | 4TZZ|1|K | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 5 | 4TZV|1|B | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization | X-ray diffraction | 5.03 | 2014-09-10 |
| 6 | 4TZW|1|B | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization | X-ray diffraction | 4.67 | 2014-09-10 |
| 7 | 4TZP|1|B | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-ray diffraction | 8.5 | 2014-09-10 |
| 8 | 4TZP|1|E | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-ray diffraction | 8.5 | 2014-09-10 |
Release history
| Release | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4TZP|1|B | As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-RAY DIFFRACTION | 8.5 | 70 | |
| 2 | 4TZP|1|E | As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-RAY DIFFRACTION | 8.5 | 75 | |
| 3 | 4TZV|1|B | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization | X-RAY DIFFRACTION | 5.03 | 75 | |
| 4 | 4TZW|1|B | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization | X-RAY DIFFRACTION | 4.67 | 75 | |
| 5 | 4TZZ|1|E | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 | |
| 6 | 4TZZ|1|B | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 | |
| 7 | 4TZZ|1|K | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 | |
| 8 | 4TZZ|1|H | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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