NR_20.0_51962.7

Members (16)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	4YCP\|1\|B (rep)	Transfer RNA	tRNATrp	Escherichia coli	Bacteria	RF00005	E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp	X-ray diffraction	2.55	62	2015-04-22
2	9LPC\|1\|C	Transfer RNA	tRNA(Trp)	Escherichia coli	Bacteria	RF00005	Crystal structure of Escherichia coli trptophanyl-tRNA synthetase in complex with tRNA(Trp)	X-ray diffraction	2.82	73	2025-05-07
3	4V5S\|1\|AY	Transfer RNA	A-SITE TRNA G24A TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	76	2014-07-09
4	4V5R\|1\|CY	Transfer RNA	A-SITE TRNA TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	76	2014-07-09
5	4V5S\|1\|CY	Transfer RNA	A-SITE TRNA G24A TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	76	2014-07-09
6	4V5R\|1\|AY	Transfer RNA	A-SITE TRNA TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	76	2014-07-09
7	9LPC\|1\|D	Transfer RNA	tRNA(Trp)	Escherichia coli	Bacteria	RF00005	Crystal structure of Escherichia coli trptophanyl-tRNA synthetase in complex with tRNA(Trp)	X-ray diffraction	2.82	64	2025-05-07
8	4V5L\|1\|AY	Transfer RNA	A-SITE TRNA G24A TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	X-ray diffraction	3.1	76	2014-07-09
9	4V5Q\|1\|AY	Transfer RNA	A-SITE TRNA G24A TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	76	2014-07-09
10	4V5Q\|1\|CY	Transfer RNA	A-SITE TRNA G24A TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	76	2014-07-09
11	4V5P\|1\|AY	Transfer RNA	A-SITE TRNA A9C TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	76	2014-07-09
12	4V5P\|1\|CY	Transfer RNA	A-SITE TRNA A9C TRP-TRNA TRP, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	76	2014-07-09
13	8PKL\|1\|W	Transfer RNA	mRNA, tRNA-Trp (P-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)	Electron microscopy	3.09	76	2024-03-06
14	8R3V\|1\|W	Transfer RNA	messenger RNA, tRNA-Trp (P-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (non-rotated disome interface)	Electron microscopy	3.28	76	2024-03-06
15	8RCL\|1\|W	Transfer RNA	messenger RNA, tRNA-Trp (P-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Non-rotated disome interface class 1)	Electron microscopy	3.49	76	2024-03-13
16	8RCM\|1\|W	Transfer RNA	messenger RNA, tRNA-Trp (P-site)	Escherichia coli	Bacteria	RF00005	Escherichia coli paused disome complex (Non-rotated disome interface class 2)	Electron microscopy	3.59	76	2024-03-06

Release history

Release	3.386	3.387	3.388	3.389	3.390	3.391	3.392
Date	2025-05-07	2025-05-14	2025-05-21	2025-05-28	2025-06-04	2025-06-11	2025-06-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	View	PDB	Title	Method	Resolution	#NTs
1		4V5L\|1\|AY	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	X-RAY DIFFRACTION	3.1	76
2		4V5S\|1\|AY	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
3		4V5S\|1\|CY	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
4		4V5Q\|1\|CY	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
5		4V5Q\|1\|AY	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
6		4V5P\|1\|CY	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
7		4V5P\|1\|AY	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
8		4V5R\|1\|AY	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
9		4V5R\|1\|CY	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
10		4YCP\|1\|B	E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp	X-RAY DIFFRACTION	2.55	62
11		9LPC\|1\|C	Crystal structure of Escherichia coli trptophanyl-tRNA synthetase in complex with tRNA(Trp)	X-RAY DIFFRACTION	2.82	73
12		9LPC\|1\|D	Crystal structure of Escherichia coli trptophanyl-tRNA synthetase in complex with tRNA(Trp)	X-RAY DIFFRACTION	2.82	64
13		8RCM\|1\|W	Escherichia coli paused disome complex (Non-rotated disome interface class 2)	ELECTRON MICROSCOPY	3.59	76
14		8RCL\|1\|W	Escherichia coli paused disome complex (Non-rotated disome interface class 1)	ELECTRON MICROSCOPY	3.49	76
15		8R3V\|1\|W	Escherichia coli paused disome complex (non-rotated disome interface)	ELECTRON MICROSCOPY	3.28	76
16		8PKL\|1\|W	Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)	ELECTRON MICROSCOPY	3.09	76

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

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