#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O1A|1|B8 (rep)Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
27O1C|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanElectron microscopy2.62021-09-01
37O19|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanElectron microscopy2.92021-09-01
46SZS|1|xTransfer RNAmRNA, P-site tRNA-Pro(CGG)Escherichia coliBacteriaRF00005Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisElectron microscopy3.062019-12-04
55MGP|1|xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.12016-12-14
66ENU|1|xTransfer RNAmRNA, Proline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.12017-11-22
76ENF|1|xTransfer RNAproline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNAEscherichia coliBacteriaRF00005Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.22017-11-22
87CPJ|1|9Transfer RNAmRNA, P/P tRNAEscherichia coliBacteriaRF00005ycbZ-stalled 70S ribosomeElectron microscopy3.32021-12-08
96NUO|1|XVTransfer RNAmRNA, P-site tRNA-ProEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
106NUO|1|QVTransfer RNAmRNA, P-site tRNA-ProEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
116ENJ|1|xTransfer RNAmRNA, Proline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
126ENJ|1|9Transfer RNAProline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
136O3M|1|QVTransfer RNAmRNA, P-site ASLProEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14
146O3M|1|XVTransfer RNAmRNA, P-site ASLProEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14

Release history

Release3.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.242
Date2021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_56101.3NR_20.0_56101.23.208(13) 5MGP|1|x, 6ENF|1|x, 6ENJ|1|9, 6ENJ|1|x, 6ENU|1|x, 6NUO|1|QV, 6NUO|1|XV, 6O3M|1|QV, 6O3M|1|XV, 6SZS|1|x, 7O19|1|B8, 7O1A|1|B8, 7O1C|1|B8(1) 7CPJ|1|9(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_56101.3NR_20.0_56101.43.243(14) 5MGP|1|x, 6ENF|1|x, 6ENJ|1|9, 6ENJ|1|x, 6ENU|1|x, 6NUO|1|QV, 6NUO|1|XV, 6O3M|1|QV, 6O3M|1|XV, 6SZS|1|x, 7CPJ|1|9, 7O19|1|B8, 7O1A|1|B8, 7O1C|1|B8(0) (3) 7Z20|1|v, 7ZOD|1|v, 7ZP8|1|v

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16NUO|1|QVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
26O3M|1|QVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
36O3M|1|XVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
46NUO|1|XVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
57O19|1|B8Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.977
67O1C|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.677
77O1A|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.474
86SZS|1|xRelease factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.0677
95MGP|1|xStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.177
107CPJ|1|9ycbZ-stalled 70S ribosomeELECTRON MICROSCOPY3.377
116ENF|1|xCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.277
126ENU|1|xPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.177
136ENJ|1|xPolyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777
146ENJ|1|9Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0189 s