Equivalence class NR_20.0_68624.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6EM3|1|2 (rep) | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.2 | 157 | 2017-12-27 |
| 2 | 6EM5|1|2 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 4.3 | 158 | 2017-12-27 |
| 3 | 6EM4|1|2 | 5.8S ribosomal RNA | Saccharomyces cerevisiae genomic DNA sequence contains ITS1, 5.8S rRNA gene, ITS2, strain IMA 105Y | Saccharomyces cerevisiae | Eukarya | RF00002 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 4.1 | 158 | 2017-12-27 |
| 4 | 4V7F|1|2 | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | Arx1 pre-60S particle. | Electron microscopy | 8.7 | 158 | 2014-07-09 |
| 5 | 7OHT|1|2 | 5.8S ribosomal RNA | 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A | Electron microscopy | 4.7 | 19 | 2021-11-03 |
| 6 | 5JCS|1|y | 5.8S ribosomal RNA | 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF00002 | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | Electron microscopy | 9.5 | 158 | 2016-11-16 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5JCS|1|y | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | ELECTRON MICROSCOPY | 9.5 | 158 | |
| 2 | 6EM4|1|2 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 4.1 | 158 | |
| 3 | 4V7F|1|2 | Arx1 pre-60S particle. | ELECTRON MICROSCOPY | 8.7 | 158 | |
| 4 | 7OHT|1|2 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A | ELECTRON MICROSCOPY | 4.7 | 19 | |
| 5 | 6EM3|1|2 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 3.2 | 157 | |
| 6 | 6EM5|1|2 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | ELECTRON MICROSCOPY | 4.3 | 158 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: