#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V9K|1|AW (rep)Transfer RNAtransfer RNAEscherichia coliBacteriaRF0000570S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
24V9K|1|CWTransfer RNAtransfer RNAEscherichia coliBacteriaRF0000570S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
34V9M|1|CWTransfer RNAmessenger RNA, transfer RNAEscherichia coliBacteriaRF0000570S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction42014-07-09
44V9M|1|AWTransfer RNAmessenger RNA, transfer RNAEscherichia coliBacteriaRF0000570S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction42014-07-09
54V9L|1|AWTransfer RNAmessenger RNA, transfer RNAEscherichia coliBacteriaRF0000570S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
64V9L|1|CWTransfer RNAtransfer RNAEscherichia coliBacteriaRF0000570S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.52014-07-09
74W29|1|AWTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF0000570S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-ray diffraction3.82014-10-01
84W29|1|CWTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF0000570S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-ray diffraction3.82014-10-01
94V9J|1|AWTransfer RNAmessenger RNA, tRNA-MetEscherichia coliBacteriaRF0000570S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.862014-07-09
104V9J|1|CWTransfer RNAmessenger RNA, tRNA-MetEscherichia coliBacteriaRF0000570S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-ray diffraction3.862014-07-09
116Q97|1|8Transfer RNAtRNA-MetEscherichia coliBacteriaRF00005Structure of tmRNA SmpB bound in A site of E. coli 70S ribosomeElectron microscopy3.92019-03-13
124V7B|1|AWTransfer RNAformyl-methionine specific initiator transfer RNA, messenger RNAEscherichia coliBacteriaRF00005Visualization of two tRNAs trapped in transit during EF-G-mediated translocationElectron microscopy6.82014-07-09

Release history

Release3.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_78233.2NR_20.0_78233.13.65(11) 4V7B|1|AW, 4V9J|1|AW, 4V9J|1|CW, 4V9K|1|AW, 4V9K|1|CW, 4V9L|1|AW, 4V9L|1|CW, 4V9M|1|AW, 4V9M|1|CW, 4W29|1|AW, 4W29|1|CW(1) 6Q97|1|8(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14W29|1|AW70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-RAY DIFFRACTION3.877
24W29|1|CW70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.X-RAY DIFFRACTION3.877
34V7B|1|AWVisualization of two tRNAs trapped in transit during EF-G-mediated translocationELECTRON MICROSCOPY6.877
44V9J|1|AW70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.8677
54V9J|1|CW70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.8677
64V9M|1|CW70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION477
74V9L|1|CW70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.577
84V9L|1|AW70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.577
94V9M|1|AW70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION477
104V9K|1|CW70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.577
114V9K|1|AW70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.577
126Q97|1|8Structure of tmRNA SmpB bound in A site of E. coli 70S ribosomeELECTRON MICROSCOPY3.977

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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