RNA 3D Hub //

Equivalence class NR_20.0_79531.2 Current

Showing 1 to 2 of 2 entries
#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19F1U|1|X+ 9F1U|1|Z (rep)RNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*G)-3'), RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP*U)-3')Mus musculusCryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 81-degree helical twistElectron microscopy3.67282025-02-26
29F2W|1|X+ 9F2W|1|YRNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*G)-3'), RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP*U)-3')Mus musculusCryo-EM structure of the I923V MDA5-dsRNA filament in complex with ATPElectron microscopy4.21282025-02-26

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.3923.393
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-182025-06-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

Showing 1 to 2 of 2 entries
#SViewPDBTitleMethodResolution#NTs
19F1U|1|X+ 9F1U|1|ZCryo-EM structure of the I923V MDA5-dsRNA filament with ADP-AlF4 bound and 81-degree helical twistELECTRON MICROSCOPY3.6728
29F2W|1|X+ 9F2W|1|YCryo-EM structure of the I923V MDA5-dsRNA filament in complex with ATPELECTRON MICROSCOPY4.2128

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

9F1U|1|X+9F1U|1|Z:9F1U|1|X+9F1U|1|Z = 09F1U|1|X+9F1U|1|Z:9F2W|1|X+9F2W|1|Y = 0.04349F2W|1|X+9F2W|1|Y:9F1U|1|X+9F1U|1|Z = 0.04349F2W|1|X+9F2W|1|Y:9F2W|1|X+9F2W|1|Y = 09F1U|1|X+9F1U|1|Z9F2W|1|X+9F2W|1|YDiscrepancy0.000.010.020.030.04

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