NR_20.0_81815.5

Members (45)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	#NTs	Date
1	8T2X\|1\|tP (rep)	Transfer RNA	P site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	Electron microscopy	2.46	75	2024-12-11
2	8T2Y\|1\|tP	Transfer RNA	P site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	Electron microscopy	2.2	75	2024-12-11
3	8T2X\|1\|tA	Transfer RNA	A site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	Electron microscopy	2.46	76	2024-12-11
4	8T2Y\|1\|tA	Transfer RNA	A site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	Electron microscopy	2.2	76	2024-12-11
5	6TB3\|1\|n	Transfer RNA	mRNA, tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	75	2020-04-22
6	8T2Z\|1\|tP	Transfer RNA	P site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	Electron microscopy	2.4	75	2024-12-11
7	8K82\|1\|C5	Transfer RNA	tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	Electron microscopy	3	75	2024-07-10
8	8T2Z\|1\|tA	Transfer RNA	A site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	Electron microscopy	2.4	76	2024-12-11
9	6TNU\|1\|n	Transfer RNA	mRNA, P-site tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	Electron microscopy	3.1	75	2020-04-22
10	8UT0\|1\|n	Transfer RNA	P site initiator tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA	Electron microscopy	3.22	75	2024-11-06
11	8UTI\|1\|n	Transfer RNA	P site initiator tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Eukaryotic 80S ribosome with Reh1 and A/P site tRNA	Electron microscopy	3.13	75	2024-11-06
12	8Z70\|1\|t	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding	Electron microscopy	3.2	75	2024-12-11
13	9VTH\|1\|16	Transfer RNA	RNA (5'-R(PAPCPAPAPUPG)-3'), tRNA(iMet)	Saccharomyces cerevisiae	Eukarya	RF00005	cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA	Electron microscopy	4.7	75	2026-07-15
14	7NRC\|1\|Sn	Transfer RNA	RNA (5'-R(PAPUPGPAPAPA)-3'), tRNA (75-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	Electron microscopy	3.9	75	2021-05-05
15	8XU8\|1\|s	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	Electron microscopy	3.4	75	2024-12-11
16	8CAS\|1\|1	Transfer RNA	mRNA, tRNA	Saccharomyces cerevisiae W303	Eukarya	RF00005	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)	Electron microscopy	3.3	75	2023-05-24
17	8S8H\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)	Electron microscopy	4	75	2024-09-11
18	7B7D\|1\|Sn	Transfer RNA	mRNA, tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	Electron microscopy	3.3	75	2021-03-10
19	8S8G\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)	Electron microscopy	4	75	2024-09-11
20	8XU8\|1\|t	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	Electron microscopy	3.4	75	2024-12-11
21	8YLD\|1\|t	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation	Electron microscopy	3.9	75	2024-12-11
22	8RW1\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation	Electron microscopy	3.35	75	2024-09-11
23	6FYX\|1\|1	Transfer RNA	mRNA (31-MER), tRNAi	Saccharomyces cerevisiae	Eukarya	RF00005	Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)	Electron microscopy	3.5	75	2018-12-05
24	8S8D\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)	Electron microscopy	3.45	75	2024-09-11
25	9YDC\|1\|n	Transfer RNA	messenger RNA, P site tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition	Electron microscopy	3.02	66	2026-09-30
26	7B7D\|1\|Sm	Transfer RNA	mRNA, tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	Electron microscopy	3.3	75	2021-03-10
27	8S8E\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)	Electron microscopy	3.85	75	2024-09-11
28	8S8F\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)	Electron microscopy	3.95	75	2024-09-11
29	6FYY\|1\|1	Transfer RNA	mRNA (31-MER), tRNAi	Saccharomyces cerevisiae	Eukarya	RF00005	Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)	Electron microscopy	3.02	75	2018-12-05
30	8YLR\|1\|u	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation	Electron microscopy	3.9	74	2024-12-11
31	8S8I\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)	Electron microscopy	4.3	75	2024-09-11
32	8Z71\|1\|t	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding	Electron microscopy	3.6	75	2024-12-11
33	9YDD\|1\|n	Transfer RNA	messenger RNA, P site tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition	Electron microscopy	2.66	67	2026-09-30
34	6GSN\|1\|1	Transfer RNA	mRNA, tRNAi (75-MER)	Saccharomyces cerevisiae	Eukarya	RF00005	Structure of a partial yeast 48S preinitiation complex in closed conformation	Electron microscopy	5.75	75	2019-06-26
35	6GSM\|1\|1	Transfer RNA	Met-tRNAi, mRNA (5'-R(PAPAP*U)-3')	Saccharomyces cerevisiae	Eukarya	RF00005	Structure of a partial yeast 48S preinitiation complex in open conformation	Electron microscopy	5.15	75	2019-07-31
36	7NRD\|1\|Sn	Transfer RNA	tRNA (75-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA	Electron microscopy	4.36	75	2021-04-14
37	8S8K\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)	Electron microscopy	4	75	2024-11-06
38	8YLD\|1\|s	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation	Electron microscopy	3.9	75	2024-12-11
39	6ZU9\|1\|1	Transfer RNA	mRNA, tRNA	Saccharomyces cerevisiae	Eukarya	RF00005	Structure of a yeast ABCE1-bound 48S initiation complex	Electron microscopy	6.2	75	2020-10-28
40	8S8J\|1\|1	Transfer RNA	Met-tRNAi	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)	Electron microscopy	4.7	75	2024-09-11
41	9YDE\|1\|n	Transfer RNA	messenger RNA, P site tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition	Electron microscopy	2.82	66	2026-09-30
42	5OA3\|1\|1	Transfer RNA	initiator Met-tRNA-i	Saccharomyces cerevisiae	Eukarya	RF00005	Human 40S-eIF2D-re-initiation complex	Electron microscopy	4.2	75	2017-08-09
43	8YLR\|1\|t	Transfer RNA	tRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00005	State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation	Electron microscopy	3.9	75	2024-12-11
44	3J81\|1\|1	Transfer RNA	Met-tRNAi, mRNA			RF00005	CryoEM structure of a partial yeast 48S preinitiation complex	Electron microscopy	4	74	2014-11-05
45	1YFG\|1\|A	Transfer RNA	YEAST INITIATOR TRNA	Saccharomyces cerevisiae	Eukarya	RF00005	YEAST INITIATOR TRNA	X-ray diffraction	3	75	1997-09-03

Release history

Release	4.59
Date	2026-09-30

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	#NTs
1	3J81\|1\|1	CryoEM structure of a partial yeast 48S preinitiation complex	ELECTRON MICROSCOPY	4	74
2	6GSN\|1\|1	Structure of a partial yeast 48S preinitiation complex in closed conformation	ELECTRON MICROSCOPY	5.75	75
3	8CAS\|1\|1	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)	ELECTRON MICROSCOPY	3.3	75
4	6FYX\|1\|1	Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)	ELECTRON MICROSCOPY	3.5	75
5	6ZU9\|1\|1	Structure of a yeast ABCE1-bound 48S initiation complex	ELECTRON MICROSCOPY	6.2	75
6	6FYY\|1\|1	Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)	ELECTRON MICROSCOPY	3.02	75
7	8S8E\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)	ELECTRON MICROSCOPY	3.85	75
8	8S8D\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)	ELECTRON MICROSCOPY	3.45	75
9	8RW1\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation	ELECTRON MICROSCOPY	3.35	75
10	8S8I\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)	ELECTRON MICROSCOPY	4.3	75
11	8S8G\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)	ELECTRON MICROSCOPY	4	75
12	8S8J\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)	ELECTRON MICROSCOPY	4.7	75
13	8S8F\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)	ELECTRON MICROSCOPY	3.95	75
14	8S8H\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)	ELECTRON MICROSCOPY	4	75
15	8S8K\|1\|1	Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)	ELECTRON MICROSCOPY	4	75
16	6GSM\|1\|1	Structure of a partial yeast 48S preinitiation complex in open conformation	ELECTRON MICROSCOPY	5.15	75
17	1YFG\|1\|A	YEAST INITIATOR TRNA	X-RAY DIFFRACTION	3	75
18	5OA3\|1\|1	Human 40S-eIF2D-re-initiation complex	ELECTRON MICROSCOPY	4.2	75
19	7NRD\|1\|Sn	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	4.36	75
20	8T2Z\|1\|tP	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	ELECTRON MICROSCOPY	2.4	75
21	8T2Y\|1\|tP	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	ELECTRON MICROSCOPY	2.2	75
22	8T2X\|1\|tP	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	ELECTRON MICROSCOPY	2.46	75
23	7NRC\|1\|Sn	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	ELECTRON MICROSCOPY	3.9	75
24	6TNU\|1\|n	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	ELECTRON MICROSCOPY	3.1	75
25	8UT0\|1\|n	Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA	ELECTRON MICROSCOPY	3.22	75
26	8UTI\|1\|n	Eukaryotic 80S ribosome with Reh1 and A/P site tRNA	ELECTRON MICROSCOPY	3.13	75
27	8XU8\|1\|t	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	ELECTRON MICROSCOPY	3.4	75
28	7B7D\|1\|Sn	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	ELECTRON MICROSCOPY	3.3	75
29	8Z71\|1\|t	State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding	ELECTRON MICROSCOPY	3.6	75
30	8Z70\|1\|t	State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding	ELECTRON MICROSCOPY	3.2	75
31	8K82\|1\|C5	Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA	ELECTRON MICROSCOPY	3	75
32	6TB3\|1\|n	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	75
33	9VTH\|1\|16	cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA	ELECTRON MICROSCOPY	4.7	75
34	7B7D\|1\|Sm	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	ELECTRON MICROSCOPY	3.3	75
35	8XU8\|1\|s	State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation	ELECTRON MICROSCOPY	3.4	75
36	8T2X\|1\|tA	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE	ELECTRON MICROSCOPY	2.46	76
37	8T2Y\|1\|tA	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE	ELECTRON MICROSCOPY	2.2	76
38	8T2Z\|1\|tA	Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST	ELECTRON MICROSCOPY	2.4	76
39	8YLD\|1\|s	State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation	ELECTRON MICROSCOPY	3.9	75
40	8YLR\|1\|t	State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation	ELECTRON MICROSCOPY	3.9	75
41	9YDE\|1\|n	Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition	ELECTRON MICROSCOPY	2.82	66
42	9YDD\|1\|n	Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition	ELECTRON MICROSCOPY	2.66	67
43	8YLR\|1\|u	State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation	ELECTRON MICROSCOPY	3.9	74
44	8YLD\|1\|t	State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation	ELECTRON MICROSCOPY	3.9	75
45	9YDC\|1\|n	Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition	ELECTRON MICROSCOPY	3.02	66

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_81815.5 Current

Release history

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