RNA 3D Hub //

Equivalence class NR_20.0_82385.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16UFJ|1|C+ 6UFJ|1|D+ 6UFJ|1|F (rep)Pistol ribozymeRNA (5'-R(*UP*CP*CP*AP*G)-3'), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(23G))-3'), RNA (50-MER)synthetic constructSyntheticRF02679Pistol ribozyme product crystal structureX-ray diffraction2.64652019-12-18
26UFJ|1|A+ 6UFJ|1|B+ 6UFJ|1|EPistol ribozymeRNA (5'-R(*UP*CP*CP*AP*G)-3'), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(23G))-3'), RNA (50-MER)synthetic constructSyntheticRF02679Pistol ribozyme product crystal structureX-ray diffraction2.64652019-12-18
36UEY|1|C+ 6UEY|1|DPistol ribozymeRNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(GVA)*UP*CP*CP*AP*A)-3'), RNA (50-MER)Escherichia coliBacteriaRF02679Pistol ribozyme transition-state analog vanadateX-ray diffraction2.8652019-12-18
45KTJ|1|A+ 5KTJ|1|BPistol (50-MER), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*GP*UP*CP*CP*AP*A)-3')metagenomeCrystal structure of Pistol, a class of self-cleaving ribozymeX-ray diffraction2.97652016-10-05
55KTJ|1|C+ 5KTJ|1|DPistol (50-MER), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*GP*UP*CP*CP*AP*A)-3')metagenomeCrystal structure of Pistol, a class of self-cleaving ribozymeX-ray diffraction2.97652016-10-05
66UEY|1|A+ 6UEY|1|BPistol ribozymeRNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(GVA)*UP*CP*CP*AP*A)-3'), RNA (50-MER)Escherichia coliBacteriaRF02679Pistol ribozyme transition-state analog vanadateX-ray diffraction2.8652019-12-18
76UF1|1|C+ 6UF1|1|DPistol ribozymeRNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(GVA)*UP*CP*CP*AP*A)-3'), RNA (50-MER)Escherichia coliBacteriaRF02679Pistol ribozyme transition-state analog vanadateX-ray diffraction3.1652019-12-18
86UF1|1|A+ 6UF1|1|BPistol ribozymeRNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(GVA)*UP*CP*CP*AP*A)-3'), RNA (50-MER)Escherichia coliBacteriaRF02679Pistol ribozyme transition-state analog vanadateX-ray diffraction3.1652019-12-18
96UFK|1|C+ 6UFK|1|D+ 6UFK|1|FPistol ribozymeRNA (5'-R(*UP*CP*CP*AP*G)-3'), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(23G))-3'), RNA (50-MER)synthetic constructSyntheticRF02679Pistol ribozyme product crystal soaked in Mn2+X-ray diffraction3.2652019-12-18
106UFK|1|A+ 6UFK|1|B+ 6UFK|1|EPistol ribozymeRNA (5'-R(*UP*CP*CP*AP*G)-3'), RNA (5'-R(*UP*CP*UP*GP*CP*UP*CP*UP*CP*(23G))-3'), RNA (50-MER)synthetic constructSyntheticRF02679Pistol ribozyme product crystal soaked in Mn2+X-ray diffraction3.2652019-12-18

Release history

Release3.3823.3833.3843.3853.3863.3873.3883.3893.3903.391
Date2025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16UEY|1|C+ 6UEY|1|DPistol ribozyme transition-state analog vanadateX-RAY DIFFRACTION2.865
26UF1|1|C+ 6UF1|1|DPistol ribozyme transition-state analog vanadateX-RAY DIFFRACTION3.165
36UFK|1|C+ 6UFK|1|D+ 6UFK|1|FPistol ribozyme product crystal soaked in Mn2+X-RAY DIFFRACTION3.265
46UFJ|1|C+ 6UFJ|1|D+ 6UFJ|1|FPistol ribozyme product crystal structureX-RAY DIFFRACTION2.6465
55KTJ|1|C+ 5KTJ|1|DCrystal structure of Pistol, a class of self-cleaving ribozymeX-RAY DIFFRACTION2.9765
65KTJ|1|A+ 5KTJ|1|BCrystal structure of Pistol, a class of self-cleaving ribozymeX-RAY DIFFRACTION2.9765
76UFK|1|A+ 6UFK|1|B+ 6UFK|1|EPistol ribozyme product crystal soaked in Mn2+X-RAY DIFFRACTION3.265
86UFJ|1|A+ 6UFJ|1|B+ 6UFJ|1|EPistol ribozyme product crystal structureX-RAY DIFFRACTION2.6465
96UEY|1|A+ 6UEY|1|BPistol ribozyme transition-state analog vanadateX-RAY DIFFRACTION2.865
106UF1|1|A+ 6UF1|1|BPistol ribozyme transition-state analog vanadateX-RAY DIFFRACTION3.165

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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