#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14V4R|1|AV (rep)Transfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.9762014-07-09
24V4S|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.76762014-07-09
34V4T|1|AVTransfer RNAP-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.46762014-07-09
44V4R|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction5.9762014-07-09
54V4S|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex.X-ray diffraction6.76762014-07-09
64V4T|1|AWTransfer RNAE-site tRNA (Phe)Escherichia coliBacteriaRF00005Crystal structure of the whole ribosomal complex with a stop codon in the A-site.X-ray diffraction6.46762014-07-09
74V49|1|AWTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.7762014-07-09
84V49|1|AVTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-ray diffraction8.7762014-07-09
94V66|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy9762014-07-09
104V65|1|AETransfer RNAA/T, P and E-site tRNAsEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy9762014-07-09
113EP2|1|YTransfer RNAtRNAEscherichia coliBacteriaRF00005Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMElectron microscopy9742008-12-16
123EQ3|1|YTransfer RNAtRNAEscherichia coliBacteriaRF00005Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMElectron microscopy9742008-12-16
134V65|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy9752014-07-09
144V66|1|AATransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy9752014-07-09
154V66|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome and the tRNAs in Post-accommodation stateElectron microscopy9752014-07-09
164V65|1|APTransfer RNAA/T, P and E-site tRNAs, mRNA modelEscherichia coliBacteriaRF00005Structure of the E. coli ribosome in the Pre-accommodation stateElectron microscopy9752014-07-09
174V48|1|A6Transfer RNAtRNA-PHEEscherichia coliBacteriaRF00005Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeElectron microscopy11.5762014-07-09
183DEG|1|ATransfer RNAA/L-tRNAEscherichia coliBacteriaRF00005Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPElectron microscopy10.9762008-08-19
191MJ1|1|CTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy13762002-11-01
201ZO1|1|FTransfer RNAP/I-site tRNAEscherichia coliBacteriaRF00005IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexElectron microscopy13.8762005-06-14
211ZO3|1|ATransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.8762005-06-14
221ZO3|1|BTransfer RNAtRNAEscherichia coliBacteriaRF00005The P-site and P/E-site tRNA structures fitted to P/I site codon.Electron microscopy13.8762005-06-14
231ML5|1|BTransfer RNAA- AND P-SITE MESSENGER RNA CODONS, T-RNA(PHE)Escherichia coliBacteriaRF00005Structure of the E. coli ribosomal termination complex with release factor 2Electron microscopy14762003-01-14
241MJ1|1|DTransfer RNAPhe-tRNAEscherichia coliBacteriaRF00005FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEElectron microscopy13762002-11-01
254V4W|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy15762014-07-09
264V4W|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy15762014-07-09
274V4W|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143Electron microscopy15762014-07-09
284V4V|1|AVTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy15762014-07-09
294V4V|1|AWTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy15762014-07-09
304V4V|1|AUTransfer RNAtRNAEscherichia coliBacteriaRF00005Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056Electron microscopy15762014-07-09

Release history

Release3.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.3653.3663.3673.3683.3693.3703.3713.3723.3733.3743.3753.3763.377
Date2020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-112024-12-182024-12-252025-01-012025-01-082025-01-152025-01-222025-01-292025-02-052025-02-122025-02-192025-02-262025-03-05

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
13DEG|1|AComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.976
24V66|1|AAStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
34V49|1|AWCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
44V4W|1|AWStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
51MJ1|1|DFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1376
61ZO3|1|BThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
71ZO3|1|AThe P-site and P/E-site tRNA structures fitted to P/I site codon.ELECTRON MICROSCOPY13.876
81ZO1|1|FIF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complexELECTRON MICROSCOPY13.876
94V4V|1|AVStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
104V4V|1|AWStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
114V4V|1|AUStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY1576
124V4W|1|AUStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
134V4W|1|AVStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY1576
144V4S|1|AWCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
154V4R|1|AWCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
164V4T|1|AWCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
174V65|1|AEStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY976
184V66|1|AEStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY976
194V65|1|APStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
204V66|1|APStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY975
214V4T|1|AVCrystal structure of the whole ribosomal complex with a stop codon in the A-site.X-RAY DIFFRACTION6.4676
224V4S|1|AVCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION6.7676
234V4R|1|AVCrystal structure of the whole ribosomal complex.X-RAY DIFFRACTION5.976
244V49|1|AVCrystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.X-RAY DIFFRACTION8.776
251ML5|1|BStructure of the E. coli ribosomal termination complex with release factor 2ELECTRON MICROSCOPY1476
261MJ1|1|CFITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOMEELECTRON MICROSCOPY1376
274V65|1|AAStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY975
283EP2|1|YModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974
294V48|1|A6Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.576
303EQ3|1|YModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY974

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0179 s