Equivalence class NR_20.0_83891.13 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2015-10-21 |
| 2 | 5HKV|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-ray diffraction | 3.66 | 2017-05-03 |
| 3 | 4WFA|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2015-10-21 |
| 4 | 5HL7|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-ray diffraction | 3.55 | 2016-12-21 |
| 5 | 4WCE|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-ray diffraction | 3.53 | 2015-10-21 |
| 6 | 4WFB|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2015-10-21 |
| 7 | 5NRG|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2017-08-09 |
| 8 | 6S0Z|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.3 | 2019-08-21 |
| 9 | 6S0X|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | Electron microscopy | 2.42 | 2019-08-21 |
| 10 | 6HMA|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | Electron microscopy | 2.65 | 2018-11-14 |
| 11 | 5NGM|1|AB | 5S ribosomal RNA | 5S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
| 12 | 6DDD|1|2 | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | Electron microscopy | 3.1 | 2019-03-20 |
| 13 | 6DDG|1|2 | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | Electron microscopy | 3.1 | 2019-03-20 |
| 14 | 5T7V|1|C | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
| 15 | 6S12|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.2 | 2019-08-21 |
| 16 | 5ND8|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 17 | 5ND9|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
| 18 | 5LI0|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
| 19 | 5TCU|1|C | 5S ribosomal RNA | 5S rRNA CHAIN | Staphylococcus aureus | Bacteria | RF00001 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
| 20 | 6S13|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | Electron microscopy | 3.58 | 2019-08-21 |
| 21 | 5NG8|1|BB | 5S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 | ||||
| 22 | 6FXC|1|BB | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 23 | 6FXC|1|AB | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2018-03-21 |
| 24 | 5NG8|1|AB | 5S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_83891.13 | NR_20.0_83891.12 | 3.88 | (20) 4WCE|1|Y, 4WF9|1|Y, 4WFA|1|Y, 4WFB|1|Y, 5HKV|1|Y, 5HL7|1|Y, 5LI0|1|B, 5ND8|1|B, 5ND9|1|B, 5NG8|1|AB, 5NG8|1|BB, 5NGM|1|AB, 5NRG|1|Y, 5T7V|1|C, 5TCU|1|C, 6DDD|1|2, 6DDG|1|2, 6FXC|1|AB, 6FXC|1|BB, 6HMA|1|B | (4) 6S0X|1|B, 6S0Z|1|B, 6S12|1|B, 6S13|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_83891.13 | NR_20.0_44396.1 | 3.99 | (2) 6DDD|1|2, 6DDG|1|2 | (22) 4WCE|1|Y, 4WF9|1|Y, 4WFA|1|Y, 4WFB|1|Y, 5HKV|1|Y, 5HL7|1|Y, 5LI0|1|B, 5ND8|1|B, 5ND9|1|B, 5NG8|1|AB, 5NG8|1|BB, 5NGM|1|AB, 5NRG|1|Y, 5T7V|1|C, 5TCU|1|C, 6FXC|1|AB, 6FXC|1|BB, 6HMA|1|B, 6S0X|1|B, 6S0Z|1|B, 6S12|1|B, 6S13|1|B | (0) |
| NR_20.0_83891.13 | NR_20.0_83891.14 | 3.99 | (22) 4WCE|1|Y, 4WF9|1|Y, 4WFA|1|Y, 4WFB|1|Y, 5HKV|1|Y, 5HL7|1|Y, 5LI0|1|B, 5ND8|1|B, 5ND9|1|B, 5NG8|1|AB, 5NG8|1|BB, 5NGM|1|AB, 5NRG|1|Y, 5T7V|1|C, 5TCU|1|C, 6FXC|1|AB, 6FXC|1|BB, 6HMA|1|B, 6S0X|1|B, 6S0Z|1|B, 6S12|1|B, 6S13|1|B | (2) 6DDD|1|2, 6DDG|1|2 | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5T7V|1|C | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 114 | |
| 2 | 5TCU|1|C | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 114 | |
| 3 | 5ND8|1|B | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 114 | |
| 4 | 5ND9|1|B | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 114 | |
| 5 | 5LI0|1|B | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 114 | |
| 6 | 4WFB|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 114 | |
| 7 | 4WF9|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 114 | |
| 8 | 4WFA|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 114 | |
| 9 | 4WCE|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 114 | |
| 10 | 5NRG|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 114 | |
| 11 | 5HKV|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 114 | |
| 12 | 5HL7|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 114 | |
| 13 | 6S13|1|B | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 115 | |
| 14 | 6S12|1|B | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 115 | |
| 15 | 6S0X|1|B | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 115 | |
| 16 | 6S0Z|1|B | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 114 | |
| 17 | 6HMA|1|B | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 115 | |
| 18 | 5NGM|1|AB | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 115 | |
| 19 | 6FXC|1|AB | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | |
| 20 | 5NG8|1|AB | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | |
| 21 | 5NG8|1|BB | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | |
| 22 | 6FXC|1|BB | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | |
| 23 | 6DDG|1|2 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6 | ELECTRON MICROSCOPY | 3.1 | 104 | |
| 24 | 6DDD|1|2 | Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5 | ELECTRON MICROSCOPY | 3.1 | 104 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: