Equivalence class NR_20.0_87323.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7S3H|1|R (rep) | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation | Electron microscopy | 2.5 | 2022-04-20 | |||
| 2 | 8YGJ|1|B | RNA (137-MER) | Streptococcus pyogenes | SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) | Electron microscopy | 3.2 | 2024-06-05 | |||
| 3 | 8WUS|1|B | RNA (115-MER) | Streptococcus pyogenes | SpCas9-MMLV RT-pegRNA-target DNA complex (termination) | Electron microscopy | 2.9 | 2024-06-05 | |||
| 4 | 8G1I|1|B | sgRNA | Streptococcus pyogenes | SpCas9 with sgRNA and target DNA | Electron microscopy | 3.12 | 2023-05-17 | |||
| 5 | 8T6O|1|B | gRNA | Streptococcus pyogenes | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop | Electron microscopy | 3.1 | 2024-05-01 | |||
| 6 | 7S36|1|R | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation | Electron microscopy | 3.2 | 2022-04-20 | |||
| 7 | 7S38|1|R | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop | Electron microscopy | 3.3 | 2022-04-20 | |||
| 8 | 7S37|1|R | Single-guide RNA | Streptococcus pyogenes | Cas9:sgRNA (S. pyogenes) in the open-protein conformation | Electron microscopy | 3.2 | 2022-04-20 |
Release history
| Release | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8YGJ|1|B | SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt) | ELECTRON MICROSCOPY | 3.2 | 136 | |
| 2 | 8WUS|1|B | SpCas9-MMLV RT-pegRNA-target DNA complex (termination) | ELECTRON MICROSCOPY | 2.9 | 115 | |
| 3 | 8T6O|1|B | SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop | ELECTRON MICROSCOPY | 3.1 | 87 | |
| 4 | 7S36|1|R | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation | ELECTRON MICROSCOPY | 3.2 | 87 | |
| 5 | 7S38|1|R | Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop | ELECTRON MICROSCOPY | 3.3 | 87 | |
| 6 | 7S3H|1|R | Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation | ELECTRON MICROSCOPY | 2.5 | 30 | |
| 7 | 7S37|1|R | Cas9:sgRNA (S. pyogenes) in the open-protein conformation | ELECTRON MICROSCOPY | 3.2 | 46 | |
| 8 | 8G1I|1|B | SpCas9 with sgRNA and target DNA | ELECTRON MICROSCOPY | 3.12 | 98 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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