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Equivalence class NR_20.0_90506.34 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
15TBW|1|1+ 5TBW|1|4 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
25TBW|1|AR+ 5TBW|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction333072017-07-26
34V88|1|A5+ 4V88|1|A8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333082014-07-09
44V88|1|A1+ 4V88|1|A4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction333072014-07-09
55I4L|1|5+ 5I4L|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133082016-06-22
65I4L|1|1+ 5I4L|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.133072016-06-22
75MEI|1|AR+ 5MEI|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
85MEI|1|1+ 5MEI|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.533072017-06-28
96HHQ|1|AR+ 6HHQ|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133052019-02-20
106HHQ|1|1+ 6HHQ|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.133072019-02-20
115OBM|1|5+ 5OBM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432922017-12-13
125OBM|1|1+ 5OBM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.432562017-12-13
135LYB|1|5+ 5LYB|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533082016-11-23
145NDV|1|1+ 5NDV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332352017-12-13
155ON6|1|1+ 5ON6|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
165LYB|1|1+ 5LYB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.2533072016-11-23
175ON6|1|AR+ 5ON6|1|ATLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.133072018-02-28
185NDV|1|5+ 5NDV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.332452017-12-13
195NDW|1|1+ 5NDW|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.732482017-12-13
205NDW|1|5+ 5NDW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.732382017-12-13
215NDG|1|5+ 5NDG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.732842017-12-13
225NDG|1|1+ 5NDG|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.732362017-12-13
235TGM|1|1+ 5TGM|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533072017-01-18
245TGM|1|5+ 5TGM|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.533082017-01-18
254V7R|1|B1+ 4V7R|1|B3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction433642014-07-09
264V7R|1|D1+ 4V7R|1|D3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome.X-ray diffraction433642014-07-09
275DAT|1|5+ 5DAT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533272016-08-31
285DGV|1|5+ 5DGV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133072016-12-14
295DAT|1|1+ 5DAT|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.1533072016-08-31
305DGV|1|1+ 5DGV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.133062016-12-14
315DGE|1|5+ 5DGE|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533082017-01-25
325TGA|1|5+ 5TGA|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333082016-11-23
335DGF|1|5+ 5DGF|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333272016-12-14
345TGA|1|1+ 5TGA|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.333072016-11-23
355DGF|1|1+ 5DGF|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.333072016-12-14
365DGE|1|1+ 5DGE|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeEukaryaRF02543 + RF00002Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.4533072017-01-25
375DC3|1|5+ 5DC3|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533272016-06-01
385DC3|1|1+ 5DC3|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.2533072016-06-01
396T4Q|1|C1+ 6T4Q|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.633422019-12-25
406TB3|1|BQ+ 6TB3|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.833812020-04-22
416SNT|1|1+ 6SNT|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.833422020-03-04
424U4R|1|1+ 4U4R|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833072014-10-22
434U4R|1|5+ 4U4R|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.833082014-10-22
444U3U|1|5+ 4U3U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933082014-10-22
454U3U|1|1+ 4U3U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.933072014-10-22
464U3M|1|1+ 4U3M|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
474U4Q|1|5+ 4U4Q|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
484U3M|1|5+ 4U3M|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25s rRNA, 5.8s rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
494U4U|1|1+ 4U4U|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
504U4Q|1|1+ 4U4Q|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
514U4U|1|5+ 4U4U|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
524U52|1|5+ 4U52|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333082014-10-22
534U52|1|1+ 4U52|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction333072014-10-22
546Q8Y|1|BQ+ 6Q8Y|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.133192019-03-13
555M1J|1|14+ 5M1J|1|44Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.334532017-01-18
566T7T|1|C1+ 6T7T|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.133422019-12-25
574U6F|1|1+ 4U6F|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
584U6F|1|5+ 4U6F|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
596QIK|1|A+ 6QIK|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.133022019-06-26
606TNU|1|BQ+ 6TNU|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.133422020-04-22
614U4N|1|5+ 4U4N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
624U4Z|1|5+ 4U4Z|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133082014-10-22
634U4N|1|1+ 4U4N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
644U4Z|1|1+ 4U4Z|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.133072014-10-22
656RZZ|1|A+ 6RZZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.233022019-06-26
666T7I|1|C1+ 6T7I|1|C3Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.233422019-12-25
675T62|1|A+ 5T62|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.133622017-02-08
684U3N|1|5+ 4U3N|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
694U4Y|1|5+ 4U4Y|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
704U3N|1|1+ 4U3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
714U55|1|5+ 4U55|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
726R87|1|1+ 6R87|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.434742019-06-26
734U4Y|1|1+ 4U4Y|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
743JCT|1|1+ 3JCT|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.0832162016-06-01
756S47|1|AA+ 6S47|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.2833072019-07-24
764U51|1|5+ 4U51|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
774U51|1|1+ 4U51|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
784U55|1|1+ 4U55|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
794U50|1|5+ 4U50|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233082014-10-22
804U50|1|1+ 4U50|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.233072014-10-22
815H4P|1|1+ 5H4P|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.0732492017-01-25
826R86|1|1+ 6R86|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.434182019-07-31
835JUP|1|B+ 5JUP|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.534672016-10-05
846HD7|1|1+ 6HD7|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.434932018-12-19
856RI5|1|A+ 6RI5|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S RNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.333032019-06-26
866QT0|1|A+ 6QT0|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.433202019-06-26
876N8M|1|A+ 6N8M|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.533612019-03-13
886N8O|1|A+ 6N8O|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.533592019-03-13
894U53|1|1+ 4U53|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333072014-10-22
904U53|1|5+ 4U53|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.333082014-10-22
916R84|1|1+ 6R84|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)Electron microscopy3.634742019-06-26
926SV4|1|YQ+ 6SV4|1|YSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
936SV4|1|BQ+ 6SV4|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
946SV4|1|ZQ+ 6SV4|1|ZSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.332842020-03-04
956N8L|1|1+ 6N8L|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitElectron microscopy3.633582019-03-13
966N8K|1|1+ 6N8K|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitElectron microscopy3.633582019-03-13
975APO|1|5+ 5APO|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.4132702015-12-16
986QTZ|1|A+ 6QTZ|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.533022019-06-26
996N8J|1|1+ 6N8J|1|3Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.532052019-03-13
1004U56|1|1+ 4U56|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533072014-10-22
1014U56|1|5+ 4U56|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.4533082014-10-22
1026N8N|1|A+ 6N8N|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitElectron microscopy3.833612019-03-13
1035MC6|1|BQ+ 5MC6|1|BSLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.833232017-01-18
1046GQB|1|1+ 6GQB|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)Electron microscopy3.933812018-07-11
1055JUU|1|B+ 5JUU|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy434652016-10-05
1066T83|1|1b+ 6T83|1|3bLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy433422019-12-25
1075JUT|1|B+ 5JUT|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy434672016-10-05
1085JUO|1|B+ 5JUO|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy434672016-10-05
1096T83|1|Aa+ 6T83|1|CaLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy432842019-12-25
1106GQV|1|1+ 6GQV|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)Electron microscopy433812018-07-11
1116S05|1|A+ 6S05|1|yLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.933022019-06-26
1125JUS|1|B+ 5JUS|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)Electron microscopy4.234672016-10-05
1136FT6|1|1+ 6FT6|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 7S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsElectron microscopy3.932202018-03-28
1146ELZ|1|1+ 6ELZ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesElectron microscopy3.326152017-12-27
1155T6R|1|A+ 5T6R|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexElectron microscopy4.233622017-02-08
1165APN|1|5+ 5APN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.9132702015-12-16
1174U4O|1|5+ 4U4O|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.633082014-10-22
1184U4O|1|1+ 4U4O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.633072014-10-22
1194V8Y|1|B5+ 4V8Y|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy4.333052014-07-09
1206GQ1|1|1+ 6GQ1|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA5S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)Electron microscopy4.433812018-07-11
1215GAK|1|1+ 5GAK|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.8833232016-02-24
1226EM1|1|1+ 6EM1|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.619432017-12-27
1236I7O|1|BQLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.331272019-01-16
1246I7O|1|YQLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.331272019-01-16
1256C0F|1|1+ 6C0F|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA5.8S rRNA, Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast nucleolar pre-60S ribosomal subunit (state 2)Electron microscopy3.715152018-03-14
1263J6Y|1|2S+ 3J6Y|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.134662014-06-11
1273J6X|1|2S+ 3J6X|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.134662014-06-11
1283J77|1|2S+ 3J77|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)Electron microscopy6.234452014-08-06
1293J78|1|2S+ 3J78|1|8SLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)Electron microscopy6.334602014-08-06
1304V8Z|1|B5+ 4V8Z|1|B8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy6.633052014-07-09
1316CB1|1|1+ 6CB1|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNA35S pre-ribosomal RNA miscRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Yeast nucleolar pre-60S ribosomal subunit (state 3)Electron microscopy4.615282018-03-14
1325Z3G|1|A+ 5Z3G|1|BLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)Electron microscopy3.6516572018-04-11
1334V8T|1|5+ 4V8T|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1Electron microscopy8.133082014-07-09
1344V7F|1|1Large subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543Arx1 pre-60S particle.Electron microscopy8.733942014-07-09
1354V6I|1|DA+ 4V6I|1|DBLarge subunit ribosomal RNA + 5.8S ribosomal RNA25S rRNA, 5.8S rRNASaccharomyces cerevisiaeEukaryaRF02543 + RF00002Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.835112014-07-09
1365JCS|1|xLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02543CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.533942016-11-16
1375FL8|1|xLarge subunit ribosomal RNA25S ribosomal RNASaccharomyces cerevisiaeEukaryaRF02540CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.527792015-12-02

Release history

Release3.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.136
Date2020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_90506.34NR_20.0_90506.333.123(135) 3J6X|1|2S+3J6X|1|8S, 3J6Y|1|2S+3J6Y|1|8S, 3J77|1|2S+3J77|1|8S, 3J78|1|2S+3J78|1|8S, 3JCT|1|1+3JCT|1|2, 4U3M|1|1+4U3M|1|4, 4U3M|1|5+4U3M|1|8, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|1+4U3U|1|4, 4U3U|1|5+4U3U|1|8, 4U4N|1|1+4U4N|1|4, 4U4N|1|5+4U4N|1|8, 4U4O|1|1+4U4O|1|4, 4U4O|1|5+4U4O|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4R|1|1+4U4R|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U4U|1|5+4U4U|1|8, 4U4Y|1|1+4U4Y|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4Z|1|1+4U4Z|1|4, 4U4Z|1|5+4U4Z|1|8, 4U50|1|1+4U50|1|4, 4U50|1|5+4U50|1|8, 4U51|1|1+4U51|1|4, 4U51|1|5+4U51|1|8, 4U52|1|1+4U52|1|4, 4U52|1|5+4U52|1|8, 4U53|1|1+4U53|1|4, 4U53|1|5+4U53|1|8, 4U55|1|1+4U55|1|4, 4U55|1|5+4U55|1|8, 4U56|1|1+4U56|1|4, 4U56|1|5+4U56|1|8, 4U6F|1|1+4U6F|1|4, 4U6F|1|5+4U6F|1|8, 4V6I|1|DA+4V6I|1|DB, 4V7F|1|1, 4V7R|1|B1+4V7R|1|B3, 4V7R|1|D1+4V7R|1|D3, 4V88|1|A1+4V88|1|A4, 4V88|1|A5+4V88|1|A8, 4V8T|1|5+4V8T|1|8, 4V8Y|1|B5+4V8Y|1|B8, 4V8Z|1|B5+4V8Z|1|B8, 5APN|1|5+5APN|1|8, 5APO|1|5+5APO|1|8, 5DAT|1|1+5DAT|1|4, 5DAT|1|5+5DAT|1|8, 5DC3|1|1+5DC3|1|4, 5DC3|1|5+5DC3|1|8, 5DGE|1|1+5DGE|1|4, 5DGE|1|5+5DGE|1|8, 5DGF|1|1+5DGF|1|4, 5DGF|1|5+5DGF|1|8, 5DGV|1|1+5DGV|1|4, 5DGV|1|5+5DGV|1|8, 5FL8|1|x, 5GAK|1|1+5GAK|1|4, 5H4P|1|1+5H4P|1|4, 5I4L|1|1+5I4L|1|4, 5I4L|1|5+5I4L|1|8, 5JCS|1|x, 5JUO|1|B+5JUO|1|C, 5JUP|1|B+5JUP|1|C, 5JUS|1|B+5JUS|1|C, 5JUT|1|B+5JUT|1|C, 5JUU|1|B+5JUU|1|C, 5LYB|1|1+5LYB|1|4, 5LYB|1|5+5LYB|1|8, 5M1J|1|14+5M1J|1|44, 5MC6|1|BQ+5MC6|1|BS, 5MEI|1|1+5MEI|1|4, 5MEI|1|AR+5MEI|1|AT, 5NDG|1|1+5NDG|1|4, 5NDG|1|5+5NDG|1|8, 5NDV|1|1+5NDV|1|4, 5NDV|1|5+5NDV|1|8, 5NDW|1|1+5NDW|1|4, 5NDW|1|5+5NDW|1|8, 5OBM|1|1+5OBM|1|4, 5OBM|1|5+5OBM|1|8, 5ON6|1|1+5ON6|1|4, 5ON6|1|AR+5ON6|1|AT, 5T62|1|A+5T62|1|C, 5T6R|1|A+5T6R|1|C, 5TBW|1|1+5TBW|1|4, 5TBW|1|AR+5TBW|1|AT, 5TGA|1|1+5TGA|1|4, 5TGA|1|5+5TGA|1|8, 5TGM|1|1+5TGM|1|4, 5TGM|1|5+5TGM|1|8, 5Z3G|1|A+5Z3G|1|B, 6C0F|1|1+6C0F|1|2, 6CB1|1|1+6CB1|1|2, 6ELZ|1|1+6ELZ|1|2, 6EM1|1|1+6EM1|1|2, 6FT6|1|1+6FT6|1|2, 6GQ1|1|1+6GQ1|1|4, 6GQB|1|1+6GQB|1|4, 6GQV|1|1+6GQV|1|4, 6HD7|1|1+6HD7|1|4, 6HHQ|1|1+6HHQ|1|4, 6HHQ|1|AR+6HHQ|1|AT, 6I7O|1|BQ, 6I7O|1|YQ, 6N8J|1|1+6N8J|1|3, 6N8K|1|1+6N8K|1|3, 6N8L|1|1+6N8L|1|3, 6N8M|1|A+6N8M|1|C, 6N8N|1|A+6N8N|1|C, 6N8O|1|A+6N8O|1|C, 6Q8Y|1|BQ+6Q8Y|1|BS, 6QIK|1|A+6QIK|1|y, 6QT0|1|A+6QT0|1|y, 6QTZ|1|A+6QTZ|1|y, 6R84|1|1+6R84|1|4, 6R86|1|1+6R86|1|4, 6R87|1|1+6R87|1|4, 6RI5|1|A+6RI5|1|y, 6RZZ|1|A+6RZZ|1|y, 6S05|1|A+6S05|1|y, 6S47|1|AA+6S47|1|AC, 6SNT|1|1+6SNT|1|3, 6SV4|1|BQ+6SV4|1|BS, 6SV4|1|YQ+6SV4|1|YS, 6SV4|1|ZQ+6SV4|1|ZS, 6T4Q|1|C1+6T4Q|1|C3, 6T7I|1|C1+6T7I|1|C3, 6T7T|1|C1+6T7T|1|C3, 6T83|1|1b+6T83|1|3b, 6T83|1|Aa+6T83|1|Ca(2) 6TB3|1|BQ+6TB3|1|BS, 6TNU|1|BQ+6TNU|1|BS(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_90506.34NR_20.0_90506.353.137(137) 3J6X|1|2S+3J6X|1|8S, 3J6Y|1|2S+3J6Y|1|8S, 3J77|1|2S+3J77|1|8S, 3J78|1|2S+3J78|1|8S, 3JCT|1|1+3JCT|1|2, 4U3M|1|1+4U3M|1|4, 4U3M|1|5+4U3M|1|8, 4U3N|1|1+4U3N|1|4, 4U3N|1|5+4U3N|1|8, 4U3U|1|1+4U3U|1|4, 4U3U|1|5+4U3U|1|8, 4U4N|1|1+4U4N|1|4, 4U4N|1|5+4U4N|1|8, 4U4O|1|1+4U4O|1|4, 4U4O|1|5+4U4O|1|8, 4U4Q|1|1+4U4Q|1|4, 4U4Q|1|5+4U4Q|1|8, 4U4R|1|1+4U4R|1|4, 4U4R|1|5+4U4R|1|8, 4U4U|1|1+4U4U|1|4, 4U4U|1|5+4U4U|1|8, 4U4Y|1|1+4U4Y|1|4, 4U4Y|1|5+4U4Y|1|8, 4U4Z|1|1+4U4Z|1|4, 4U4Z|1|5+4U4Z|1|8, 4U50|1|1+4U50|1|4, 4U50|1|5+4U50|1|8, 4U51|1|1+4U51|1|4, 4U51|1|5+4U51|1|8, 4U52|1|1+4U52|1|4, 4U52|1|5+4U52|1|8, 4U53|1|1+4U53|1|4, 4U53|1|5+4U53|1|8, 4U55|1|1+4U55|1|4, 4U55|1|5+4U55|1|8, 4U56|1|1+4U56|1|4, 4U56|1|5+4U56|1|8, 4U6F|1|1+4U6F|1|4, 4U6F|1|5+4U6F|1|8, 4V6I|1|DA+4V6I|1|DB, 4V7F|1|1, 4V7R|1|B1+4V7R|1|B3, 4V7R|1|D1+4V7R|1|D3, 4V88|1|A1+4V88|1|A4, 4V88|1|A5+4V88|1|A8, 4V8T|1|5+4V8T|1|8, 4V8Y|1|B5+4V8Y|1|B8, 4V8Z|1|B5+4V8Z|1|B8, 5APN|1|5+5APN|1|8, 5APO|1|5+5APO|1|8, 5DAT|1|1+5DAT|1|4, 5DAT|1|5+5DAT|1|8, 5DC3|1|1+5DC3|1|4, 5DC3|1|5+5DC3|1|8, 5DGE|1|1+5DGE|1|4, 5DGE|1|5+5DGE|1|8, 5DGF|1|1+5DGF|1|4, 5DGF|1|5+5DGF|1|8, 5DGV|1|1+5DGV|1|4, 5DGV|1|5+5DGV|1|8, 5FL8|1|x, 5GAK|1|1+5GAK|1|4, 5H4P|1|1+5H4P|1|4, 5I4L|1|1+5I4L|1|4, 5I4L|1|5+5I4L|1|8, 5JCS|1|x, 5JUO|1|B+5JUO|1|C, 5JUP|1|B+5JUP|1|C, 5JUS|1|B+5JUS|1|C, 5JUT|1|B+5JUT|1|C, 5JUU|1|B+5JUU|1|C, 5LYB|1|1+5LYB|1|4, 5LYB|1|5+5LYB|1|8, 5M1J|1|14+5M1J|1|44, 5MC6|1|BQ+5MC6|1|BS, 5MEI|1|1+5MEI|1|4, 5MEI|1|AR+5MEI|1|AT, 5NDG|1|1+5NDG|1|4, 5NDG|1|5+5NDG|1|8, 5NDV|1|1+5NDV|1|4, 5NDV|1|5+5NDV|1|8, 5NDW|1|1+5NDW|1|4, 5NDW|1|5+5NDW|1|8, 5OBM|1|1+5OBM|1|4, 5OBM|1|5+5OBM|1|8, 5ON6|1|1+5ON6|1|4, 5ON6|1|AR+5ON6|1|AT, 5T62|1|A+5T62|1|C, 5T6R|1|A+5T6R|1|C, 5TBW|1|1+5TBW|1|4, 5TBW|1|AR+5TBW|1|AT, 5TGA|1|1+5TGA|1|4, 5TGA|1|5+5TGA|1|8, 5TGM|1|1+5TGM|1|4, 5TGM|1|5+5TGM|1|8, 5Z3G|1|A+5Z3G|1|B, 6C0F|1|1+6C0F|1|2, 6CB1|1|1+6CB1|1|2, 6ELZ|1|1+6ELZ|1|2, 6EM1|1|1+6EM1|1|2, 6FT6|1|1+6FT6|1|2, 6GQ1|1|1+6GQ1|1|4, 6GQB|1|1+6GQB|1|4, 6GQV|1|1+6GQV|1|4, 6HD7|1|1+6HD7|1|4, 6HHQ|1|1+6HHQ|1|4, 6HHQ|1|AR+6HHQ|1|AT, 6I7O|1|BQ, 6I7O|1|YQ, 6N8J|1|1+6N8J|1|3, 6N8K|1|1+6N8K|1|3, 6N8L|1|1+6N8L|1|3, 6N8M|1|A+6N8M|1|C, 6N8N|1|A+6N8N|1|C, 6N8O|1|A+6N8O|1|C, 6Q8Y|1|BQ+6Q8Y|1|BS, 6QIK|1|A+6QIK|1|y, 6QT0|1|A+6QT0|1|y, 6QTZ|1|A+6QTZ|1|y, 6R84|1|1+6R84|1|4, 6R86|1|1+6R86|1|4, 6R87|1|1+6R87|1|4, 6RI5|1|A+6RI5|1|y, 6RZZ|1|A+6RZZ|1|y, 6S05|1|A+6S05|1|y, 6S47|1|AA+6S47|1|AC, 6SNT|1|1+6SNT|1|3, 6SV4|1|BQ+6SV4|1|BS, 6SV4|1|YQ+6SV4|1|YS, 6SV4|1|ZQ+6SV4|1|ZS, 6T4Q|1|C1+6T4Q|1|C3, 6T7I|1|C1+6T7I|1|C3, 6T7T|1|C1+6T7T|1|C3, 6T83|1|1b+6T83|1|3b, 6T83|1|Aa+6T83|1|Ca, 6TB3|1|BQ+6TB3|1|BS, 6TNU|1|BQ+6TNU|1|BS(0) (6) 6YLG|1|1+6YLG|1|2, 6YLH|1|1+6YLH|1|2, 6YLX|1|1+6YLX|1|2, 6YLY|1|1+6YLY|1|3, 6Z6J|1|C1+6Z6J|1|C3, 6Z6K|1|C1+6Z6K|1|C3

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
14V6I|1|DA+ 4V6I|1|DBLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.83511
25JUO|1|B+ 5JUO|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY43467
35JUS|1|B+ 5JUS|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.23467
45JUP|1|B+ 5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53467
55JUU|1|B+ 5JUU|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY43465
65JUT|1|B+ 5JUT|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY43467
73J6X|1|2S+ 3J6X|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.13466
83J6Y|1|2S+ 3J6Y|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.13466
95NDW|1|1+ 5NDW|1|4Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73248
105NDG|1|1+ 5NDG|1|4Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73236
115M1J|1|14+ 5M1J|1|44Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33453
125NDV|1|1+ 5NDV|1|4Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33235
136T83|1|1b+ 6T83|1|3bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY43342
146T7I|1|C1+ 6T7I|1|C3Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.23342
156T7T|1|C1+ 6T7T|1|C3Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.13342
166T4Q|1|C1+ 6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63342
176SNT|1|1+ 6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83342
186TB3|1|BQ+ 6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83381
196S47|1|AA+ 6S47|1|ACSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.283307
204U4O|1|1+ 4U4O|1|4Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63307
215MEI|1|1+ 5MEI|1|4Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
225ON6|1|1+ 5ON6|1|4Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
234U50|1|1+ 4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
244U53|1|1+ 4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33307
254U3N|1|1+ 4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
264U3U|1|1+ 4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93307
274U4R|1|1+ 4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83307
284V88|1|A1+ 4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33307
295LYB|1|1+ 5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253307
304U6F|1|1+ 4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
314U3M|1|1+ 4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
324U4Y|1|1+ 4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
335TBW|1|1+ 5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
345DC3|1|1+ 5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253307
354U56|1|1+ 4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453307
364U51|1|1+ 4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
374U55|1|1+ 4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23307
384U4Z|1|1+ 4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
394U4N|1|1+ 4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
405I4L|1|1+ 5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
414U4U|1|1+ 4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
424U4Q|1|1+ 4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
434U52|1|1+ 4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
446HHQ|1|1+ 6HHQ|1|4Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13307
455TGA|1|1+ 5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33307
465TGM|1|1+ 5TGM|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53307
475DGV|1|1+ 5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13306
485DGE|1|1+ 5DGE|1|4Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453307
495DGF|1|1+ 5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33307
505DAT|1|1+ 5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153307
515OBM|1|1+ 5OBM|1|4Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43256
526TNU|1|BQ+ 6TNU|1|BSYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.13342
536Q8Y|1|BQ+ 6Q8Y|1|BSCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.13319
545MC6|1|BQ+ 5MC6|1|BSCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.83323
555GAK|1|1+ 5GAK|1|4Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883323
566HD7|1|1+ 6HD7|1|4Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.43493
575H4P|1|1+ 5H4P|1|4Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073249
585T6R|1|A+ 5T6R|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.23362
595T62|1|A+ 5T62|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.13362
605APO|1|5+ 5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413270
615APN|1|5+ 5APN|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913270
626R84|1|1+ 6R84|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.63474
636R87|1|1+ 6R87|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.43474
646QT0|1|A+ 6QT0|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.43320
656R86|1|1+ 6R86|1|4Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.43418
664V8Y|1|B5+ 4V8Y|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.33305
674V8Z|1|B5+ 4V8Z|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.63305
685NDV|1|5+ 5NDV|1|8Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33245
696HHQ|1|AR+ 6HHQ|1|ATCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13305
705MEI|1|AR+ 5MEI|1|ATCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53307
715ON6|1|AR+ 5ON6|1|ATCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13307
725TBW|1|AR+ 5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33307
734U4O|1|5+ 4U4O|1|8Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63308
744U50|1|5+ 4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
754U53|1|5+ 4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33308
764U6F|1|5+ 4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
774U52|1|5+ 4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
784U4Q|1|5+ 4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
794U4U|1|5+ 4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
804U51|1|5+ 4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
814U3M|1|5+ 4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33308
824U4Y|1|5+ 4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
834V88|1|A5+ 4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33308
844V8T|1|5+ 4V8T|1|8Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.13308
854U4R|1|5+ 4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83308
864U3U|1|5+ 4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93308
874U3N|1|5+ 4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
884U4Z|1|5+ 4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
894U55|1|5+ 4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23308
904U56|1|5+ 4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453308
915TGA|1|5+ 5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33308
925I4L|1|5+ 5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
934U4N|1|5+ 4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13308
945LYB|1|5+ 5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253308
955TGM|1|5+ 5TGM|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53308
965DGV|1|5+ 5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13307
975DGE|1|5+ 5DGE|1|8Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453308
985DC3|1|5+ 5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253327
995DGF|1|5+ 5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33327
1005DAT|1|5+ 5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153327
1015OBM|1|5+ 5OBM|1|8Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43292
1026SV4|1|ZQ+ 6SV4|1|ZSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
1036SV4|1|YQ+ 6SV4|1|YSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
1046I7O|1|YQThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.33127
1056SV4|1|BQ+ 6SV4|1|BSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33284
1066I7O|1|BQThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.33127
1076T83|1|Aa+ 6T83|1|CaStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY43284
1085NDG|1|5+ 5NDG|1|8Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73284
1095NDW|1|5+ 5NDW|1|8Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.73238
1103J78|1|2S+ 3J78|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.33460
1113J77|1|2S+ 3J77|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.23445
1126GQV|1|1+ 6GQV|1|4Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY43381
1136GQB|1|1+ 6GQB|1|4Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.93381
1146GQ1|1|1+ 6GQ1|1|4Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.43381
1156RI5|1|A+ 6RI5|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.33303
1166QTZ|1|A+ 6QTZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.53302
1176N8O|1|A+ 6N8O|1|CCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53359
1184V7R|1|B1+ 4V7R|1|B3Yeast 80S ribosome.X-RAY DIFFRACTION43364
1194V7R|1|D1+ 4V7R|1|D3Yeast 80S ribosome.X-RAY DIFFRACTION43364
1206RZZ|1|A+ 6RZZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.23302
1216QIK|1|A+ 6QIK|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.13302
1226S05|1|A+ 6S05|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.93302
1236N8N|1|A+ 6N8N|1|CCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.83361
1246N8M|1|A+ 6N8M|1|CCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53361
1256N8L|1|1+ 6N8L|1|3Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.63358
1266N8K|1|1+ 6N8K|1|3Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.63358
1276N8J|1|1+ 6N8J|1|3Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53205
1285JCS|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.53394
1295FL8|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52779
1306C0F|1|1+ 6C0F|1|2Yeast nucleolar pre-60S ribosomal subunit (state 2)ELECTRON MICROSCOPY3.71515
1316CB1|1|1+ 6CB1|1|2Yeast nucleolar pre-60S ribosomal subunit (state 3)ELECTRON MICROSCOPY4.61528
1325Z3G|1|A+ 5Z3G|1|BCryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)ELECTRON MICROSCOPY3.651657
1336ELZ|1|1+ 6ELZ|1|2State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32615
1346EM1|1|1+ 6EM1|1|2State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.61943
1353JCT|1|1+ 3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083216
1366FT6|1|1+ 6FT6|1|2Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.93220
1374V7F|1|1Arx1 pre-60S particle.ELECTRON MICROSCOPY8.73394

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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