NR_20.0_90506.66

Members (227)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5TBW\|1\|1+ 5TBW\|1\|4 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
2	5TBW\|1\|AR+ 5TBW\|1\|AT	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
3	4V88\|1\|A5+ 4V88\|1\|A8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
4	4V88\|1\|A1+ 4V88\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
5	7OSA\|1\|25S+ 7OSA\|1\|58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	2021-12-08
6	5I4L\|1\|5+ 5I4L\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
7	5I4L\|1\|1+ 5I4L\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
8	5MEI\|1\|AR+ 5MEI\|1\|AT	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
9	5MEI\|1\|1+ 5MEI\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
10	6HHQ\|1\|AR+ 6HHQ\|1\|AT	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	2019-02-20
11	6HHQ\|1\|1+ 6HHQ\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	2019-02-20
12	5OBM\|1\|5+ 5OBM\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
13	5OBM\|1\|1+ 5OBM\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
14	5LYB\|1\|5+ 5LYB\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
15	5NDV\|1\|1+ 5NDV\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
16	5ON6\|1\|1+ 5ON6\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
17	5LYB\|1\|1+ 5LYB\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
18	5ON6\|1\|AR+ 5ON6\|1\|AT	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
19	7OSM\|1\|25S+ 7OSM\|1\|58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	2021-12-08
20	5NDV\|1\|5+ 5NDV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
21	5NDW\|1\|1+ 5NDW\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
22	5NDW\|1\|5+ 5NDW\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
23	5NDG\|1\|5+ 5NDG\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
24	5NDG\|1\|1+ 5NDG\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
25	5TGM\|1\|1+ 5TGM\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
26	5TGM\|1\|5+ 5TGM\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
27	4V7R\|1\|B1+ 4V7R\|1\|B3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
28	4V7R\|1\|D1+ 4V7R\|1\|D3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
29	5DAT\|1\|5+ 5DAT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
30	5DGV\|1\|5+ 5DGV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(CPCP(8AN)(Pro)*(Pro))-3')	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
31	5DAT\|1\|1+ 5DAT\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
32	5DGV\|1\|1+ 5DGV\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(CPCP(8AN)(Pro)*(Pro))-3')	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
33	5DGE\|1\|5+ 5DGE\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(CPCP*(NA))-3')	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
34	5TGA\|1\|5+ 5TGA\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
35	5DGF\|1\|5+ 5DGF\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
36	5TGA\|1\|1+ 5TGA\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
37	5DGF\|1\|1+ 5DGF\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
38	5DGE\|1\|1+ 5DGE\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(CPCP*(NA))-3')	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
39	5DC3\|1\|5+ 5DC3\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
40	5DC3\|1\|1+ 5DC3\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
41	8CCS\|1\|AA+ 8CCS\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	Electron microscopy	1.97	2023-09-20
42	8CDR\|1\|AA+ 8CDR\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.04	2023-09-20
43	8CEH\|1\|AA+ 8CEH\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.05	2023-09-20
44	8EVT\|1\|A1+ 8EVT\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	Electron microscopy	2.2	2023-09-06
45	8CGN\|1\|AA+ 8CGN\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Non-rotated 80S S. cerevisiae ribosome with ligands	Electron microscopy	2.28	2023-09-20
46	7ZW0\|1\|LA+ 7ZW0\|1\|LD	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1)	Saccharomyces cerevisiae W303	Eukarya	RF02543 + RF00002	FAP-80S Complex - Rotated state	Electron microscopy	2.4	2022-10-05
47	8AGX\|1\|f+ 8AGX\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	Electron microscopy	2.4	2023-03-08
48	7TOP\|1\|A25S+ 7TOP\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	Electron microscopy	2.4	2022-05-25
49	8EVP\|1\|A1+ 8EVP\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	Electron microscopy	2.38	2023-09-06
50	8BN3\|1\|1	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	Electron microscopy	2.4	2024-01-10
51	8AAF\|1\|f+ 8AAF\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state G	Electron microscopy	2.5	2023-03-08
52	8EWC\|1\|A1+ 8EWC\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	Electron microscopy	2.45	2023-09-06
53	8CIV\|1\|AA+ 8CIV\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.47	2023-09-20
54	7ZUX\|1\|5+ 7ZUX\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Collided ribosome in a disome unit from S. cerevisiae	Electron microscopy	2.5	2023-02-22
55	8EUB\|1\|A1+ 8EUB\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	Electron microscopy	2.52	2023-09-06
56	8HFR\|1\|1e+ 8HFR\|1\|3n	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	NPC-trapped pre-60S particle	Electron microscopy	2.64	2023-04-12
57	8AGZ\|1\|f+ 8AGZ\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	Electron microscopy	2.6	2023-03-08
58	8AGT\|1\|f+ 8AGT\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state F	Electron microscopy	2.6	2023-03-08
59	8AGV\|1\|f+ 8AGV\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state H	Electron microscopy	2.6	2023-03-08
60	8AGW\|1\|f+ 8AGW\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state D	Electron microscopy	2.6	2023-03-08
61	7UOO\|1\|1+ 7UOO\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	Electron microscopy	2.34	2023-03-15
62	8CG8\|1\|AA+ 8CG8\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.57	2023-09-20
63	7V08\|1\|1+ 7V08\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain	Electron microscopy	2.36	2023-03-15
64	8EVS\|1\|A1+ 8EVS\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	Electron microscopy	2.62	2023-09-06
65	8AGU\|1\|f+ 8AGU\|1\|i	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast RQC complex in state E	Electron microscopy	2.7	2023-03-08
66	7UQB\|1\|1+ 7UQB\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4	Electron microscopy	2.43	2023-03-15
67	6T4Q\|1\|C1+ 6T4Q\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	Electron microscopy	2.6	2019-12-25
68	7UQZ\|1\|1+ 7UQZ\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	Electron microscopy	2.44	2023-03-15
69	7TOO\|1\|A25S+ 7TOO\|1\|A58S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.7	2022-05-25
70	8CF5\|1\|AA+ 8CF5\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	Electron microscopy	2.71	2023-09-20
71	8EVQ\|1\|A1+ 8EVQ\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	Electron microscopy	2.72	2023-09-06
72	8CDL\|1\|AA+ 8CDL\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	Electron microscopy	2.72	2023-09-20
73	7MPJ\|1\|A1+ 7MPJ\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Stm1 bound vacant 80S structure isolated from nop1-D243A	Electron microscopy	2.7	2022-05-11
74	6WOO\|1\|5+ 6WOO\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	Electron microscopy	2.9	2020-09-23
75	6TB3\|1\|BQ+ 6TB3\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	2020-04-22
76	6SNT\|1\|1+ 6SNT\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome stalled on SDD1 mRNA.	Electron microscopy	2.8	2020-03-04
77	8EVR\|1\|A1+ 8EVR\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	Electron microscopy	2.87	2023-09-06
78	8EWB\|1\|A1+ 8EWB\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	Electron microscopy	2.87	2023-09-06
79	7AZY\|1\|E+ 7AZY\|1\|G	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Context-specific inhibition of eukaryotic translation by macrolide antibiotics	Electron microscopy	2.877	2021-05-19
80	4U4R\|1\|1+ 4U4R\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
81	4U4R\|1\|5+ 4U4R\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
82	8BIP\|1\|1+ 8BIP\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	Electron microscopy	3.1	2023-02-08
83	7UG6\|1\|1+ 7UG6\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	Electron microscopy	2.9	2022-12-21
84	4U3U\|1\|5+ 4U3U\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
85	4U3U\|1\|1+ 4U3U\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
86	7N8B\|1\|A1+ 7N8B\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S, 5.8S	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	2022-05-11
87	7MPI\|1\|A1+ 7MPI\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8 S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Stm1 bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	2022-05-11
88	7ZS5\|1\|1+ 7ZS5\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	Electron microscopy	3.2	2023-02-22
89	5T62\|1\|A+ 5T62\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S Ribosomal RNA, 5.8S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	Electron microscopy	3.1	2017-02-08
90	4U3M\|1\|1+ 4U3M\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25s rRNA, 5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
91	6YLG\|1\|1+ 6YLG\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	Electron microscopy	3	2020-07-29
92	4U4Q\|1\|5+ 4U4Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
93	8CKU\|1\|AA+ 8CKU\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin	Electron microscopy	3.11	2023-09-20
94	4U3M\|1\|5+ 4U3M\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25s rRNA, 5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
95	4U4U\|1\|1+ 4U4U\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
96	4U4Q\|1\|1+ 4U4Q\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
97	4U4U\|1\|5+ 4U4U\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
98	4U52\|1\|5+ 4U52\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
99	4U52\|1\|1+ 4U52\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
100	7RR5\|1\|C1+ 7RR5\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of ribosomal complex bound with Rbg1/Tma46	Electron microscopy	3.23	2021-11-10
101	7U0H\|1\|1+ 7U0H\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model	Electron microscopy	2.76	2022-12-14
102	6Q8Y\|1\|BQ+ 6Q8Y\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	Electron microscopy	3.1	2019-03-13
103	7OHQ\|1\|1+ 7OHQ\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	Electron microscopy	3.1	2021-11-03
104	6YLH\|1\|1+ 6YLH\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Rix1-Rea1 pre-60S particle - full composite structure	Electron microscopy	3.1	2020-07-29
105	4U6F\|1\|1+ 4U6F\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
106	6T7T\|1\|C1+ 6T7T\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of yeast 80S ribosome stalled on poly(A) tract.	Electron microscopy	3.1	2019-12-25
107	4U6F\|1\|5+ 4U6F\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
108	6QIK\|1\|A+ 6QIK\|1\|y	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.1	2019-06-26
109	7B7D\|1\|LA+ 7B7D\|1\|LC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	Electron microscopy	3.3	2021-03-10
110	6XIR\|1\|1+ 6XIR\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	35S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	Electron microscopy	3.2	2020-08-26
111	5M1J\|1\|14+ 5M1J\|1\|44	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
112	4U4N\|1\|5+ 4U4N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
113	6TNU\|1\|BQ+ 6TNU\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	Electron microscopy	3.1	2020-04-22
114	4U4Z\|1\|5+ 4U4Z\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
115	4U4N\|1\|1+ 4U4N\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
116	4U4Z\|1\|1+ 4U4Z\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
117	6RZZ\|1\|A+ 6RZZ\|1\|y	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.2	2019-06-26
118	8V87\|1\|1+ 8V87\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)	Electron microscopy	2.66	2024-05-01
119	6T7I\|1\|C1+ 6T7I\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	Electron microscopy	3.2	2019-12-25
120	7BT6\|1\|1+ 7BT6\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	RDN25-1 rRNA, RDN5.8-1 rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)	Electron microscopy	3.12	2020-10-28
121	7BTB\|1\|1+ 7BTB\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	RDN25-1 rRNA, RDN5.8-1 rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)	Electron microscopy	3.22	2020-10-28
122	4U3N\|1\|5+ 4U3N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
123	4U4Y\|1\|5+ 4U4Y\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
124	3JCT\|1\|1+ 3JCT\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	RDN25-1 rRNA, RDN58-1 rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	2016-06-01
125	4U3N\|1\|1+ 4U3N\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
126	4U55\|1\|5+ 4U55\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
127	4U4Y\|1\|1+ 4U4Y\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
128	6S47\|1\|AA+ 6S47\|1\|AC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	28S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	Electron microscopy	3.28	2019-07-24
129	4U51\|1\|5+ 4U51\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
130	4U51\|1\|1+ 4U51\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
131	4U55\|1\|1+ 4U55\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
132	4U50\|1\|5+ 4U50\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
133	6R87\|1\|1+ 6R87\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	Electron microscopy	3.4	2019-06-26
134	5H4P\|1\|1+ 5H4P\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	Electron microscopy	3.07	2017-01-25
135	6M62\|1\|1+ 6M62\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	RDN25-1 rRNA, RDN58-1 rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.	Electron microscopy	3.2	2020-08-26
136	4U50\|1\|1+ 4U50\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
137	6Z6K\|1\|C1+ 6Z6K\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	Electron microscopy	3.4	2020-07-29
138	6Z6J\|1\|C1+ 6Z6J\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	Electron microscopy	3.4	2020-07-29
139	6R86\|1\|1+ 6R86\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast Vms1-60S ribosomal subunit complex (post-state)	Electron microscopy	3.4	2019-07-31
140	6RI5\|1\|A+ 6RI5\|1\|y	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S RNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.3	2019-06-26
141	7ZPQ\|1\|5+ 7ZPQ\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	Electron microscopy	3.47	2023-02-22
142	7OF1\|1\|1+ 7OF1\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	Electron microscopy	3.1	2021-11-03
143	5JUP\|1\|B+ 5JUP\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
144	6HD7\|1\|1+ 6HD7\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of the ribosome-NatA complex	Electron microscopy	3.4	2018-12-19
145	6QT0\|1\|A+ 6QT0\|1\|y	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.4	2019-06-26
146	4U53\|1\|1+ 4U53\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
147	6N8M\|1\|A+ 6N8M\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	Electron microscopy	3.5	2019-03-13
148	6N8O\|1\|A+ 6N8O\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	Electron microscopy	3.5	2019-03-13
149	7NAC\|1\|1+ 7NAC\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	Electron microscopy	3.04	2022-11-09
150	8Y0U\|1\|C1	Large subunit ribosomal RNA	25S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543	dormant ribosome with STM1	Electron microscopy	3.59	2024-02-07
151	4U53\|1\|5+ 4U53\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
152	7OH3\|1\|1+ 7OH3\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	Electron microscopy	3.4	2021-11-03
153	6SV4\|1\|YQ+ 6SV4\|1\|YS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
154	6SV4\|1\|BQ+ 6SV4\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
155	6SV4\|1\|ZQ+ 6SV4\|1\|ZS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
156	6R84\|1\|1+ 6R84\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	Electron microscopy	3.6	2019-06-26
157	7R7A\|1\|1+ 7R7A\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	Electron microscopy	3.04	2022-11-09
158	7Z34\|1\|1+ 7Z34\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	35S pre-ribosomal RNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Structure of pre-60S particle bound to DRG1(AFG2)	Electron microscopy	3.8	2022-09-21
159	6N8L\|1\|1+ 6N8L\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	Electron microscopy	3.6	2019-03-13
160	8V83\|1\|1+ 8V83\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	Saccharomyces cerevisiae S288C 25S ribosomal RNA, Saccharomyces cerevisiae S288C 5.8S ribosomal RNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)	Electron microscopy	2.53	2024-05-01
161	6N8K\|1\|1+ 6N8K\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	Electron microscopy	3.6	2019-03-13
162	5APO\|1\|5+ 5APO\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	2015-12-16
163	8BJQ\|1\|1+ 8BJQ\|1\|C3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	Electron microscopy	3.8	2023-02-08
164	8BQX\|1\|BQ+ 8BQX\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome in complex with Map1 (conformation 2)	Electron microscopy	3.8	2023-03-22
165	6QTZ\|1\|A+ 6QTZ\|1\|y	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.5	2019-06-26
166	6N8J\|1\|1+ 6N8J\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	Electron microscopy	3.5	2019-03-13
167	6OIG\|1\|5+ 6OIG\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Subunit joining exposes nascent pre-40S rRNA for processing and quality control	Electron microscopy	3.8	2020-09-30
168	4U56\|1\|1+ 4U56\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
169	4U56\|1\|5+ 4U56\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
170	8BQD\|1\|BQ+ 8BQD\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome in complex with Map1 (conformation 1)	Electron microscopy	3.9	2023-03-22
171	8CMJ\|1\|AA+ 8CMJ\|1\|CC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin	Electron microscopy	3.79	2023-09-20
172	8V84\|1\|1+ 8V84\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	Saccharomyces cerevisiae 25S ribosomal RNA, Saccharomyces cerevisiae 5.8S ribosomal RNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)	Electron microscopy	2.7	2024-05-01
173	6N8N\|1\|A+ 6N8N\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	Electron microscopy	3.8	2019-03-13
174	7NRC\|1\|LA+ 7NRC\|1\|LC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA (3184-MER), 5.8S rRNA (158-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	Electron microscopy	3.9	2021-05-05
175	5MC6\|1\|BQ+ 5MC6\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	2017-01-18
176	6GQB\|1\|1+ 6GQB\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	Electron microscopy	3.9	2018-07-11
177	5JUU\|1\|B+ 5JUU\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	2016-10-05
178	6T83\|1\|1b+ 6T83\|1\|3b	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	Electron microscopy	4	2019-12-25
179	5JUT\|1\|B+ 5JUT\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	2016-10-05
180	5JUO\|1\|B+ 5JUO\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	2016-10-05
181	6T83\|1\|Aa+ 6T83\|1\|Ca	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	Electron microscopy	4	2019-12-25
182	6S05\|1\|A+ 6S05\|1\|y	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.9	2019-06-26
183	6GQV\|1\|1+ 6GQV\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	Electron microscopy	4	2018-07-11
184	6FT6\|1\|1+ 6FT6\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 7S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	Electron microscopy	3.9	2018-03-28
185	5JUS\|1\|B+ 5JUS\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)	Electron microscopy	4.2	2016-10-05
186	6ELZ\|1\|1+ 6ELZ\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes	Electron microscopy	3.3	2017-12-27
187	6XIQ\|1\|1+ 6XIQ\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	35S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress	Electron microscopy	4.2	2020-08-26
188	5APN\|1\|5+ 5APN\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	Electron microscopy	3.91	2015-12-16
189	5T6R\|1\|A+ 5T6R\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S Ribosomal RNA, 5.8S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex	Electron microscopy	4.2	2017-02-08
190	6YLY\|1\|1+ 6YLY\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	pre-60S State NE2 (TAP-Flag-Nop53)	Electron microscopy	3.8	2020-07-29
191	7ZUW\|1\|5+ 7ZUW\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae	Electron microscopy	4.3	2023-02-22
192	4U4O\|1\|5+ 4U4O\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
193	4U4O\|1\|1+ 4U4O\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
194	7NRD\|1\|LA+ 7NRD\|1\|LC	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA (3184-MER), 5.8S rRNA (158-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA	Electron microscopy	4.36	2021-04-14
195	4V8Y\|1\|B5+ 4V8Y\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	4.3	2014-07-09
196	6GQ1\|1\|1+ 6GQ1\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5S ribosomal RNA, Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)	Electron microscopy	4.4	2018-07-11
197	6YLX\|1\|1+ 6YLX\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	pre-60S State NE1 (TAP-Flag-Nop53)	Electron microscopy	3.9	2020-07-29
198	5GAK\|1\|1+ 5GAK\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	Electron microscopy	3.88	2016-02-24
199	7ZRS\|1\|5+ 7ZRS\|1\|3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map	Electron microscopy	4.8	2023-02-22
200	7OHX\|1\|1+ 7OHX\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A	Electron microscopy	3.3	2021-11-03
201	7OHV\|1\|1+ 7OHV\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C	Electron microscopy	3.9	2021-11-03
202	6EM1\|1\|1+ 6EM1\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	Electron microscopy	3.6	2017-12-27
203	6EM5\|1\|1	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	Electron microscopy	4.3	2017-12-27
204	6EM3\|1\|1	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	Electron microscopy	3.2	2017-12-27
205	7OHU\|1\|1+ 7OHU\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B	Electron microscopy	3.7	2021-11-03
206	7OHY\|1\|1+ 7OHY\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B	Electron microscopy	3.9	2021-11-03
207	7OHW\|1\|1+ 7OHW\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B	Electron microscopy	3.5	2021-11-03
208	7OHP\|1\|1+ 7OHP\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A	Electron microscopy	3.9	2021-11-03
209	7OHR\|1\|1+ 7OHR\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	Electron microscopy	4.72	2021-11-10
210	6I7O\|1\|BQ	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	Electron microscopy	5.3	2019-01-16
211	6I7O\|1\|YQ	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	Electron microscopy	5.3	2019-01-16
212	6C0F\|1\|1+ 6C0F\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	5.8S rRNA, Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast nucleolar pre-60S ribosomal subunit (state 2)	Electron microscopy	3.7	2018-03-14
213	6EM4\|1\|1	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	Electron microscopy	4.1	2017-12-27
214	7OHS\|1\|1+ 7OHS\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543 + RF00002	Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae	Electron microscopy	4.38	2021-11-03
215	3J6Y\|1\|2S+ 3J6Y\|1\|8S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)	Electron microscopy	6.1	2014-06-11
216	3J6X\|1\|2S+ 3J6X\|1\|8S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)	Electron microscopy	6.1	2014-06-11
217	3J77\|1\|2S+ 3J77\|1\|8S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	Electron microscopy	6.2	2014-08-06
218	3J78\|1\|2S+ 3J78\|1\|8S	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	Electron microscopy	6.3	2014-08-06
219	7OHT\|1\|1	Large subunit ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF02543	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A	Electron microscopy	4.7	2021-11-03
220	8E5T\|1\|1+ 8E5T\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae BY4741	Eukarya	RF02543 + RF00002	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate	Electron microscopy	4	2023-04-12
221	6CB1\|1\|1+ 6CB1\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	35S pre-ribosomal RNA miscRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast nucleolar pre-60S ribosomal subunit (state 3)	Electron microscopy	4.6	2018-03-14
222	5Z3G\|1\|A+ 5Z3G\|1\|B	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)	Electron microscopy	3.65	2018-04-11
223	4V8Z\|1\|B5+ 4V8Z\|1\|B8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	6.6	2014-07-09
224	4V8T\|1\|5+ 4V8T\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	Electron microscopy	8.1	2014-07-09
225	4V7F\|1\|1	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	Arx1 pre-60S particle.	Electron microscopy	8.7	2014-07-09
226	4V6I\|1\|DA+ 4V6I\|1\|DB	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	Electron microscopy	8.8	2014-07-09
227	5JCS\|1\|x	Large subunit ribosomal RNA	25S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	Electron microscopy	9.5	2016-11-16

Release history

Release	3.333	3.334	3.335	3.336	3.337	3.338
Date	2024-05-01	2024-05-08	2024-05-15	2024-05-22	2024-05-29	2024-06-05

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	6EM3\|1\|1	State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	ELECTRON MICROSCOPY	3.2	1250
2	6EM4\|1\|1	State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	ELECTRON MICROSCOPY	4.1	1556
3	4V7F\|1\|1	Arx1 pre-60S particle.	ELECTRON MICROSCOPY	8.7	3394
4	6EM5\|1\|1	State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	ELECTRON MICROSCOPY	4.3	2438
5	6XIQ\|1\|1+ 6XIQ\|1\|4	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress	ELECTRON MICROSCOPY	4.2	3223
6	4V6I\|1\|DA+ 4V6I\|1\|DB	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	ELECTRON MICROSCOPY	8.8	3354
7	6OIG\|1\|5+ 6OIG\|1\|8	Subunit joining exposes nascent pre-40S rRNA for processing and quality control	ELECTRON MICROSCOPY	3.8	3243
8	6XIR\|1\|1+ 6XIR\|1\|4	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	ELECTRON MICROSCOPY	3.2	3113
9	5M1J\|1\|14+ 5M1J\|1\|44	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	3295
10	6QT0\|1\|A+ 6QT0\|1\|y	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.4	3164
11	6R87\|1\|1+ 6R87\|1\|4	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	ELECTRON MICROSCOPY	3.4	3316
12	6R84\|1\|1+ 6R84\|1\|4	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	ELECTRON MICROSCOPY	3.6	3316
13	5APN\|1\|5+ 5APN\|1\|8	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	ELECTRON MICROSCOPY	3.91	3092
14	5APO\|1\|5+ 5APO\|1\|8	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	3092
15	3J6X\|1\|2S+ 3J6X\|1\|8S	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)	ELECTRON MICROSCOPY	6.1	3308
16	3J6Y\|1\|2S+ 3J6Y\|1\|8S	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)	ELECTRON MICROSCOPY	6.1	3308
17	5JUT\|1\|B+ 5JUT\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	3309
18	5JUU\|1\|B+ 5JUU\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	3307
19	5JUP\|1\|B+ 5JUP\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	3309
20	5JUS\|1\|B+ 5JUS\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	4.2	3309
21	5JUO\|1\|B+ 5JUO\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	3309
22	8EVQ\|1\|A1+ 8EVQ\|1\|A4	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I	ELECTRON MICROSCOPY	2.72	3156
23	8EUB\|1\|A1+ 8EUB\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I	ELECTRON MICROSCOPY	2.52	3156
24	8EWB\|1\|A1+ 8EWB\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III	ELECTRON MICROSCOPY	2.87	3156
25	8EVR\|1\|A1+ 8EVR\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II	ELECTRON MICROSCOPY	2.87	3178
26	8EVS\|1\|A1+ 8EVS\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II	ELECTRON MICROSCOPY	2.62	3181
27	8EWC\|1\|A1+ 8EWC\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II	ELECTRON MICROSCOPY	2.45	3156
28	8EVP\|1\|A1+ 8EVP\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I	ELECTRON MICROSCOPY	2.38	3156
29	6WOO\|1\|5+ 6WOO\|1\|8	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	ELECTRON MICROSCOPY	2.9	3271
30	6R86\|1\|1+ 6R86\|1\|4	Yeast Vms1-60S ribosomal subunit complex (post-state)	ELECTRON MICROSCOPY	3.4	3260
31	7ZS5\|1\|1+ 7ZS5\|1\|4	Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	ELECTRON MICROSCOPY	3.2	3248
32	8AGW\|1\|f+ 8AGW\|1\|i	Yeast RQC complex in state D	ELECTRON MICROSCOPY	2.6	3217
33	5H4P\|1\|1+ 5H4P\|1\|4	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	ELECTRON MICROSCOPY	3.07	3091
34	5T6R\|1\|A+ 5T6R\|1\|C	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex	ELECTRON MICROSCOPY	4.2	3204
35	5T62\|1\|A+ 5T62\|1\|C	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	ELECTRON MICROSCOPY	3.1	3200
36	8Y0U\|1\|C1	dormant ribosome with STM1	ELECTRON MICROSCOPY	3.59	3221
37	7RR5\|1\|C1+ 7RR5\|1\|C3	Structure of ribosomal complex bound with Rbg1/Tma46	ELECTRON MICROSCOPY	3.23	3221
38	7MPI\|1\|A1+ 7MPI\|1\|A4	Stm1 bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	3096
39	7MPJ\|1\|A1+ 7MPJ\|1\|A4	Stm1 bound vacant 80S structure isolated from nop1-D243A	ELECTRON MICROSCOPY	2.7	3067
40	7N8B\|1\|A1+ 7N8B\|1\|A4	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	3115
41	8EVT\|1\|A1+ 8EVT\|1\|A4	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map	ELECTRON MICROSCOPY	2.2	3176
42	5NDV\|1\|1+ 5NDV\|1\|4	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	3078
43	7B7D\|1\|LA+ 7B7D\|1\|LC	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	ELECTRON MICROSCOPY	3.3	3223
44	6S47\|1\|AA+ 6S47\|1\|AC	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	ELECTRON MICROSCOPY	3.28	3149
45	4U4O\|1\|1+ 4U4O\|1\|4	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	3149
46	5TGM\|1\|1+ 5TGM\|1\|4	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	3149
47	5TGA\|1\|1+ 5TGA\|1\|4	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	3151
48	4U50\|1\|1+ 4U50\|1\|4	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
49	4U53\|1\|1+ 4U53\|1\|4	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	3149
50	4U52\|1\|1+ 4U52\|1\|4	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
51	4U4Z\|1\|1+ 4U4Z\|1\|4	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
52	4U55\|1\|1+ 4U55\|1\|4	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
53	4U4N\|1\|1+ 4U4N\|1\|4	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
54	5I4L\|1\|1+ 5I4L\|1\|4	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
55	4U51\|1\|1+ 4U51\|1\|4	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
56	4U4U\|1\|1+ 4U4U\|1\|4	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
57	4U4Q\|1\|1+ 4U4Q\|1\|4	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
58	4U6F\|1\|1+ 4U6F\|1\|4	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
59	5LYB\|1\|1+ 5LYB\|1\|4	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	3149
60	4U3N\|1\|1+ 4U3N\|1\|4	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
61	4V88\|1\|A1+ 4V88\|1\|A4	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	3149
62	4U4R\|1\|1+ 4U4R\|1\|4	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	3149
63	4U3U\|1\|1+ 4U3U\|1\|4	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	3149
64	4U4Y\|1\|1+ 4U4Y\|1\|4	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
65	4U3M\|1\|1+ 4U3M\|1\|4	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
66	6HHQ\|1\|1+ 6HHQ\|1\|4	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
67	5MEI\|1\|1+ 5MEI\|1\|4	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	3149
68	5ON6\|1\|1+ 5ON6\|1\|4	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	3149
69	4U56\|1\|1+ 4U56\|1\|4	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	3149
70	5TBW\|1\|1+ 5TBW\|1\|4	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
71	5DC3\|1\|1+ 5DC3\|1\|4	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	3149
72	5DGE\|1\|1+ 5DGE\|1\|4	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	3149
73	5DGV\|1\|1+ 5DGV\|1\|4	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	3148
74	5DGF\|1\|1+ 5DGF\|1\|4	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	3149
75	5DAT\|1\|1+ 5DAT\|1\|4	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	3149
76	5OBM\|1\|1+ 5OBM\|1\|4	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	3100
77	6T83\|1\|1b+ 6T83\|1\|3b	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	ELECTRON MICROSCOPY	4	3184
78	6TB3\|1\|BQ+ 6TB3\|1\|BS	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	3223
79	6SNT\|1\|1+ 6SNT\|1\|3	Yeast 80S ribosome stalled on SDD1 mRNA.	ELECTRON MICROSCOPY	2.8	3184
80	6T4Q\|1\|C1+ 6T4Q\|1\|C3	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	ELECTRON MICROSCOPY	2.6	3184
81	6T7T\|1\|C1+ 6T7T\|1\|C3	Structure of yeast 80S ribosome stalled on poly(A) tract.	ELECTRON MICROSCOPY	3.1	3184
82	6T7I\|1\|C1+ 6T7I\|1\|C3	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	ELECTRON MICROSCOPY	3.2	3184
83	8BJQ\|1\|1+ 8BJQ\|1\|C3	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	ELECTRON MICROSCOPY	3.8	3301
84	8BIP\|1\|1+ 8BIP\|1\|C3	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	ELECTRON MICROSCOPY	3.1	3301
85	7ZPQ\|1\|5+ 7ZPQ\|1\|3	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	ELECTRON MICROSCOPY	3.47	3184
86	7ZUW\|1\|5+ 7ZUW\|1\|3	Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	4.3	3163
87	7ZRS\|1\|5+ 7ZRS\|1\|3	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map	ELECTRON MICROSCOPY	4.8	3185
88	7ZUX\|1\|5+ 7ZUX\|1\|3	Collided ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	2.5	3163
89	8AGX\|1\|f+ 8AGX\|1\|i	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	ELECTRON MICROSCOPY	2.4	3216
90	8AGZ\|1\|f+ 8AGZ\|1\|i	Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	ELECTRON MICROSCOPY	2.6	3216
91	8AGT\|1\|f+ 8AGT\|1\|i	Yeast RQC complex in state F	ELECTRON MICROSCOPY	2.6	3217
92	8AAF\|1\|f+ 8AAF\|1\|i	Yeast RQC complex in state G	ELECTRON MICROSCOPY	2.5	3217
93	8AGV\|1\|f+ 8AGV\|1\|i	Yeast RQC complex in state H	ELECTRON MICROSCOPY	2.6	3217
94	8AGU\|1\|f+ 8AGU\|1\|i	Yeast RQC complex in state E	ELECTRON MICROSCOPY	2.7	3216
95	5GAK\|1\|1+ 5GAK\|1\|4	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	ELECTRON MICROSCOPY	3.88	3165
96	6HD7\|1\|1+ 6HD7\|1\|4	Cryo-EM structure of the ribosome-NatA complex	ELECTRON MICROSCOPY	3.4	3335
97	5MC6\|1\|BQ+ 5MC6\|1\|BS	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	3165
98	6Q8Y\|1\|BQ+ 6Q8Y\|1\|BS	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	ELECTRON MICROSCOPY	3.1	3161
99	7AZY\|1\|E+ 7AZY\|1\|G	Context-specific inhibition of eukaryotic translation by macrolide antibiotics	ELECTRON MICROSCOPY	2.877	3161
100	7NRD\|1\|LA+ 7NRD\|1\|LC	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	4.36	3184
101	7NRC\|1\|LA+ 7NRC\|1\|LC	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	ELECTRON MICROSCOPY	3.9	3184
102	8BQD\|1\|BQ+ 8BQD\|1\|BS	Yeast 80S ribosome in complex with Map1 (conformation 1)	ELECTRON MICROSCOPY	3.9	3299
103	6TNU\|1\|BQ+ 6TNU\|1\|BS	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	ELECTRON MICROSCOPY	3.1	3184
104	8BQX\|1\|BQ+ 8BQX\|1\|BS	Yeast 80S ribosome in complex with Map1 (conformation 2)	ELECTRON MICROSCOPY	3.8	3301
105	7ZW0\|1\|LA+ 7ZW0\|1\|LD	FAP-80S Complex - Rotated state	ELECTRON MICROSCOPY	2.4	3217
106	8BN3\|1\|1	Yeast 80S, ES7s delta, eIF5A, Stm1 containing	ELECTRON MICROSCOPY	2.4	3143
107	5NDG\|1\|1+ 5NDG\|1\|4	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	3078
108	5NDW\|1\|1+ 5NDW\|1\|4	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	3090
109	4V8Y\|1\|B5+ 4V8Y\|1\|B8	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	ELECTRON MICROSCOPY	4.3	3147
110	4V8Z\|1\|B5+ 4V8Z\|1\|B8	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	ELECTRON MICROSCOPY	6.6	3147
111	5NDW\|1\|5+ 5NDW\|1\|8	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	3080
112	5NDG\|1\|5+ 5NDG\|1\|8	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	3127
113	6T83\|1\|Aa+ 6T83\|1\|Ca	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	ELECTRON MICROSCOPY	4	3127
114	6I7O\|1\|BQ	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	ELECTRON MICROSCOPY	5.3	3127
115	6SV4\|1\|BQ+ 6SV4\|1\|BS	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	3127
116	6SV4\|1\|YQ+ 6SV4\|1\|YS	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	3127
117	6I7O\|1\|YQ	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	ELECTRON MICROSCOPY	5.3	3127
118	6SV4\|1\|ZQ+ 6SV4\|1\|ZS	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	3127
119	5DGF\|1\|5+ 5DGF\|1\|8	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	3169
120	5DAT\|1\|5+ 5DAT\|1\|8	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	3169
121	5DC3\|1\|5+ 5DC3\|1\|8	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	3169
122	4U4O\|1\|5+ 4U4O\|1\|8	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	3150
123	4U56\|1\|5+ 4U56\|1\|8	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	3150
124	5TGA\|1\|5+ 5TGA\|1\|8	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	3152
125	5LYB\|1\|5+ 5LYB\|1\|8	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	3150
126	4V8T\|1\|5+ 4V8T\|1\|8	Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	ELECTRON MICROSCOPY	8.1	3150
127	4V88\|1\|A5+ 4V88\|1\|A8	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	3150
128	4U4R\|1\|5+ 4U4R\|1\|8	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	3150
129	4U3U\|1\|5+ 4U3U\|1\|8	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	3150
130	4U3N\|1\|5+ 4U3N\|1\|8	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3151
131	5I4L\|1\|5+ 5I4L\|1\|8	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
132	4U4N\|1\|5+ 4U4N\|1\|8	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
133	4U55\|1\|5+ 4U55\|1\|8	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
134	4U4Z\|1\|5+ 4U4Z\|1\|8	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
135	4U53\|1\|5+ 4U53\|1\|8	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	3150
136	4U50\|1\|5+ 4U50\|1\|8	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
137	4U52\|1\|5+ 4U52\|1\|8	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
138	4U6F\|1\|5+ 4U6F\|1\|8	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
139	4U51\|1\|5+ 4U51\|1\|8	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
140	4U4U\|1\|5+ 4U4U\|1\|8	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
141	4U4Q\|1\|5+ 4U4Q\|1\|8	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
142	4U3M\|1\|5+ 4U3M\|1\|8	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
143	4U4Y\|1\|5+ 4U4Y\|1\|8	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
144	5DGE\|1\|5+ 5DGE\|1\|8	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	3150
145	5DGV\|1\|5+ 5DGV\|1\|8	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	3149
146	5TGM\|1\|5+ 5TGM\|1\|8	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	3150
147	5OBM\|1\|5+ 5OBM\|1\|8	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	3134
148	5TBW\|1\|AR+ 5TBW\|1\|AT	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
149	6HHQ\|1\|AR+ 6HHQ\|1\|AT	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3147
150	5ON6\|1\|AR+ 5ON6\|1\|AT	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	3149
151	5MEI\|1\|AR+ 5MEI\|1\|AT	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	3149
152	5NDV\|1\|5+ 5NDV\|1\|8	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	3087
153	6Z6J\|1\|C1+ 6Z6J\|1\|C3	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	ELECTRON MICROSCOPY	3.4	3127
154	6Z6K\|1\|C1+ 6Z6K\|1\|C3	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	ELECTRON MICROSCOPY	3.4	3127
155	7TOP\|1\|A25S+ 7TOP\|1\|A58S	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	ELECTRON MICROSCOPY	2.4	3194
156	7TOO\|1\|A25S+ 7TOO\|1\|A58S	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.7	3194
157	3J78\|1\|2S+ 3J78\|1\|8S	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	ELECTRON MICROSCOPY	6.3	3302
158	3J77\|1\|2S+ 3J77\|1\|8S	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	ELECTRON MICROSCOPY	6.2	3287
159	6GQ1\|1\|1+ 6GQ1\|1\|4	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)	ELECTRON MICROSCOPY	4.4	3223
160	6GQB\|1\|1+ 6GQB\|1\|4	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	ELECTRON MICROSCOPY	3.9	3223
161	6GQV\|1\|1+ 6GQV\|1\|4	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	ELECTRON MICROSCOPY	4	3223
162	8CMJ\|1\|AA+ 8CMJ\|1\|CC	Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin	ELECTRON MICROSCOPY	3.79	3155
163	8CG8\|1\|AA+ 8CG8\|1\|CC	Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.57	3155
164	8CEH\|1\|AA+ 8CEH\|1\|CC	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.05	3155
165	8CIV\|1\|AA+ 8CIV\|1\|CC	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.47	3155
166	8CDR\|1\|AA+ 8CDR\|1\|CC	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.04	3155
167	8CGN\|1\|AA+ 8CGN\|1\|CC	Non-rotated 80S S. cerevisiae ribosome with ligands	ELECTRON MICROSCOPY	2.28	3155
168	8CDL\|1\|AA+ 8CDL\|1\|CC	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex	ELECTRON MICROSCOPY	2.72	3148
169	8CCS\|1\|AA+ 8CCS\|1\|CC	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex	ELECTRON MICROSCOPY	1.97	3148
170	8CF5\|1\|AA+ 8CF5\|1\|CC	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin	ELECTRON MICROSCOPY	2.71	3148
171	8CKU\|1\|AA+ 8CKU\|1\|CC	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin	ELECTRON MICROSCOPY	3.11	3148
172	7OSM\|1\|25S+ 7OSM\|1\|58S	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	3162
173	7OSA\|1\|25S+ 7OSA\|1\|58S	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	3180
174	6RI5\|1\|A+ 6RI5\|1\|y	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.3	3147
175	6QTZ\|1\|A+ 6QTZ\|1\|y	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.5	3146
176	6N8O\|1\|A+ 6N8O\|1\|C	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	3201
177	4V7R\|1\|B1+ 4V7R\|1\|B3	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	3206
178	4V7R\|1\|D1+ 4V7R\|1\|D3	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	3206
179	6S05\|1\|A+ 6S05\|1\|y	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.9	3146
180	6RZZ\|1\|A+ 6RZZ\|1\|y	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.2	3146
181	6QIK\|1\|A+ 6QIK\|1\|y	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.1	3146
182	6N8N\|1\|A+ 6N8N\|1\|C	Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.8	3203
183	6N8M\|1\|A+ 6N8M\|1\|C	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	3203
184	6N8L\|1\|1+ 6N8L\|1\|3	Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.6	3201
185	7Z34\|1\|1+ 7Z34\|1\|3	Structure of pre-60S particle bound to DRG1(AFG2)	ELECTRON MICROSCOPY	3.8	3347
186	6N8K\|1\|1+ 6N8K\|1\|3	Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.6	3201
187	8HFR\|1\|1e+ 8HFR\|1\|3n	NPC-trapped pre-60S particle	ELECTRON MICROSCOPY	2.64	3274
188	6N8J\|1\|1+ 6N8J\|1\|3	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	3047
189	6YLY\|1\|1+ 6YLY\|1\|3	pre-60S State NE2 (TAP-Flag-Nop53)	ELECTRON MICROSCOPY	3.8	2676
190	6YLG\|1\|1+ 6YLG\|1\|2	Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	ELECTRON MICROSCOPY	3	3039
191	6YLH\|1\|1+ 6YLH\|1\|2	Rix1-Rea1 pre-60S particle - full composite structure	ELECTRON MICROSCOPY	3.1	3039
192	5JCS\|1\|x	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	ELECTRON MICROSCOPY	9.5	3394
193	7OF1\|1\|1+ 7OF1\|1\|2	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	ELECTRON MICROSCOPY	3.1	2787
194	7UQB\|1\|1+ 7UQB\|1\|2	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4	ELECTRON MICROSCOPY	2.43	2936
195	7V08\|1\|1+ 7V08\|1\|2	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain	ELECTRON MICROSCOPY	2.36	2933
196	7UQZ\|1\|1+ 7UQZ\|1\|2	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	ELECTRON MICROSCOPY	2.44	2933
197	7UOO\|1\|1+ 7UOO\|1\|2	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	ELECTRON MICROSCOPY	2.34	2935
198	7BTB\|1\|1+ 7BTB\|1\|2	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)	ELECTRON MICROSCOPY	3.22	3058
199	6FT6\|1\|1+ 6FT6\|1\|2	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	ELECTRON MICROSCOPY	3.9	3058
200	3JCT\|1\|1+ 3JCT\|1\|2	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	3058
201	7OH3\|1\|1+ 7OH3\|1\|2	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	ELECTRON MICROSCOPY	3.4	3013
202	7OHQ\|1\|1+ 7OHQ\|1\|2	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	ELECTRON MICROSCOPY	3.1	3053
203	7UG6\|1\|1+ 7UG6\|1\|2	Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	ELECTRON MICROSCOPY	2.9	3058
204	6M62\|1\|1+ 6M62\|1\|2	Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.	ELECTRON MICROSCOPY	3.2	2972
205	7BT6\|1\|1+ 7BT6\|1\|2	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)	ELECTRON MICROSCOPY	3.12	2962
206	6YLX\|1\|1+ 6YLX\|1\|2	pre-60S State NE1 (TAP-Flag-Nop53)	ELECTRON MICROSCOPY	3.9	2534
207	7U0H\|1\|1+ 7U0H\|1\|2	State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model	ELECTRON MICROSCOPY	2.76	2722
208	7OHV\|1\|1+ 7OHV\|1\|2	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C	ELECTRON MICROSCOPY	3.9	2141
209	6ELZ\|1\|1+ 6ELZ\|1\|2	State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes	ELECTRON MICROSCOPY	3.3	2457
210	7OHR\|1\|1+ 7OHR\|1\|2	Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	ELECTRON MICROSCOPY	4.72	2373
211	7NAC\|1\|1+ 7NAC\|1\|2	State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	ELECTRON MICROSCOPY	3.04	2657
212	7R7A\|1\|1+ 7R7A\|1\|2	State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	ELECTRON MICROSCOPY	3.04	2571
213	8V87\|1\|1+ 8V87\|1\|2	60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)	ELECTRON MICROSCOPY	2.66	2489
214	6EM1\|1\|1+ 6EM1\|1\|2	State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	ELECTRON MICROSCOPY	3.6	1785
215	7OHS\|1\|1+ 7OHS\|1\|2	Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae	ELECTRON MICROSCOPY	4.38	1697
216	7OHW\|1\|1+ 7OHW\|1\|2	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B	ELECTRON MICROSCOPY	3.5	1639
217	7OHX\|1\|1+ 7OHX\|1\|2	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A	ELECTRON MICROSCOPY	3.3	1561
218	5Z3G\|1\|A+ 5Z3G\|1\|B	Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)	ELECTRON MICROSCOPY	3.65	1501
219	8V83\|1\|1+ 8V83\|1\|2	60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)	ELECTRON MICROSCOPY	2.53	2015
220	8V84\|1\|1+ 8V84\|1\|2	60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)	ELECTRON MICROSCOPY	2.7	1970
221	6C0F\|1\|1+ 6C0F\|1\|2	Yeast nucleolar pre-60S ribosomal subunit (state 2)	ELECTRON MICROSCOPY	3.7	1357
222	6CB1\|1\|1+ 6CB1\|1\|2	Yeast nucleolar pre-60S ribosomal subunit (state 3)	ELECTRON MICROSCOPY	4.6	1370
223	7OHP\|1\|1+ 7OHP\|1\|2	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A	ELECTRON MICROSCOPY	3.9	1567
224	7OHU\|1\|1+ 7OHU\|1\|2	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B	ELECTRON MICROSCOPY	3.7	1692
225	7OHY\|1\|1+ 7OHY\|1\|2	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B	ELECTRON MICROSCOPY	3.9	1689
226	7OHT\|1\|1	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A	ELECTRON MICROSCOPY	4.7	1485
227	8E5T\|1\|1+ 8E5T\|1\|2	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate	ELECTRON MICROSCOPY	4	743

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_90506.66 Obsolete

Release history

Parents

Children