RNA 3D Hub //

Equivalence class NR_20.0_93493.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18PV7|1|C1+ 8PV7|1|C2 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureElectron microscopy2.122023-11-15
28PVL|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureElectron microscopy2.192023-12-06
38PVK|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureElectron microscopy2.552023-12-06
48PV1|1|C1+ 8PV1|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureElectron microscopy2.562023-11-15
58PV2|1|C1+ 8PV2|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1Electron microscopy2.632023-11-15
67OLC|1|1+ 7OLC|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at idle POST stateElectron microscopy2.92022-01-26
78IA0|1|C1+ 8IA0|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6Electron microscopy2.72023-05-17
87OLD|1|1+ 7OLD|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF02543 + RF00002Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateElectron microscopy32022-01-26
98PV4|1|C1+ 8PV4|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureElectron microscopy2.92023-11-15
108PV5|1|C1+ 8PV5|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureElectron microscopy2.862023-11-15
118PV3|1|C1+ 8PV3|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureElectron microscopy2.82023-11-15
128PV8|1|C1Large subunit ribosomal RNA26S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureElectron microscopy2.912024-01-10
138PV6|1|C1+ 8PV6|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureElectron microscopy2.942023-11-15
148OO0|1|1+ 8OO0|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAThermochaetoides thermophilaEukaryaRF02543 + RF00002Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosomeElectron microscopy3.12024-02-21
158I9Z|1|C1+ 8I9Z|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4Electron microscopy2.72023-05-17
167Z3N|1|1+ 7Z3N|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationElectron microscopy3.22023-04-12
177Z3O|1|1+ 7Z3O|1|4Large subunit ribosomal RNA + 5.8S ribosomal RNA26S rRNA, 5.8S rRNAThermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationElectron microscopy3.32023-04-12
188I9X|1|C1+ 8I9X|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1Electron microscopy2.82023-05-17
198I9Y|1|C1+ 8I9Y|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2Electron microscopy3.12023-05-17
208I9W|1|C1+ 8I9W|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (319-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3Electron microscopy3.12023-05-17
218I9V|1|C1+ 8I9V|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (256-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2Electron microscopy3.12023-05-17
228I9R|1|C1+ 8I9R|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (256-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPElectron microscopy3.12023-05-17
238I9T|1|C1+ 8I9T|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (256-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1Electron microscopy3.62023-05-17
248I9P|1|C1+ 8I9P|1|C2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (306-MER), RNA (3341-MER)Thermochaetoides thermophila DSM 1495EukaryaRF02543 + RF00002Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16Electron microscopy32023-05-17

Release history

Release3.3333.3343.3353.3363.3373.338
Date2024-05-012024-05-082024-05-152024-05-222024-05-292024-06-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18I9R|1|C1+ 8I9R|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNPELECTRON MICROSCOPY3.12045
28I9Z|1|C1+ 8I9Z|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4ELECTRON MICROSCOPY2.72787
38IA0|1|C1+ 8IA0|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6ELECTRON MICROSCOPY2.72928
48I9Y|1|C1+ 8I9Y|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2ELECTRON MICROSCOPY3.12609
58I9X|1|C1+ 8I9X|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1ELECTRON MICROSCOPY2.82658
68I9W|1|C1+ 8I9W|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3ELECTRON MICROSCOPY3.12163
78I9T|1|C1+ 8I9T|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1ELECTRON MICROSCOPY3.62132
88I9V|1|C1+ 8I9V|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2ELECTRON MICROSCOPY3.12152
98I9P|1|C1+ 8I9P|1|C2Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16ELECTRON MICROSCOPY31307
108PVK|1|C1Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structureELECTRON MICROSCOPY2.553104
118PV3|1|C1+ 8PV3|1|C2Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structureELECTRON MICROSCOPY2.82964
128PV4|1|C1+ 8PV4|1|C2Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structureELECTRON MICROSCOPY2.93102
138PV1|1|C1+ 8PV1|1|C2Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structureELECTRON MICROSCOPY2.563044
148PV7|1|C1+ 8PV7|1|C2Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structureELECTRON MICROSCOPY2.123044
158PVL|1|C1Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structureELECTRON MICROSCOPY2.193044
168PV2|1|C1+ 8PV2|1|C2Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1ELECTRON MICROSCOPY2.633022
178PV5|1|C1+ 8PV5|1|C2Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structureELECTRON MICROSCOPY2.863026
188PV8|1|C1Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structureELECTRON MICROSCOPY2.913053
198PV6|1|C1+ 8PV6|1|C2Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structureELECTRON MICROSCOPY2.943068
207OLD|1|1+ 7OLD|1|4Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateELECTRON MICROSCOPY33192
217Z3N|1|1+ 7Z3N|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformationELECTRON MICROSCOPY3.23190
227Z3O|1|1+ 7Z3O|1|4Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformationELECTRON MICROSCOPY3.33190
237OLC|1|1+ 7OLC|1|4Thermophilic eukaryotic 80S ribosome at idle POST stateELECTRON MICROSCOPY2.93190
248OO0|1|1+ 8OO0|1|4Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosomeELECTRON MICROSCOPY3.13190

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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