Equivalence class NR_20.0_94873.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9D7R|1|1v (rep) | PHE-Stop mRNA | Escherichia phage T4 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-ray diffraction | 2.7 | 13 | 2024-11-13 | |||
| 2 | 9D7R|1|2v | PHE-Stop mRNA | Escherichia phage T4 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-ray diffraction | 2.7 | 13 | 2024-11-13 | |||
| 3 | 9D7S|1|1v | PHE-Stop mRNA | Escherichia phage T4 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution | X-ray diffraction | 2.85 | 13 | 2024-11-13 | |||
| 4 | 9D7S|1|2v | PHE-Stop mRNA | Escherichia phage T4 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution | X-ray diffraction | 2.85 | 13 | 2024-11-13 | |||
| 5 | 9D7T|1|1v | PHE-Stop mRNA | Escherichia phage T4 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-ray diffraction | 2.7 | 13 | 2024-11-13 | |||
| 6 | 9D7T|1|2v | PHE-Stop mRNA | Escherichia phage T4 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-ray diffraction | 2.7 | 13 | 2024-11-13 | |||
| 7 | 8FZH|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D) | Electron microscopy | 2.9 | 11 | 2024-07-17 | |||
| 8 | 8FZG|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A) | Electron microscopy | 3.1 | 11 | 2024-07-17 | |||
| 9 | 8FZE|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A) | Electron microscopy | 3 | 10 | 2024-07-17 | |||
| 10 | 8FZD|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B) | Electron microscopy | 3.1 | 10 | 2024-07-17 | |||
| 11 | 8FZJ|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C) | Electron microscopy | 3 | 8 | 2024-07-17 | |||
| 12 | 8FZI|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B) | Electron microscopy | 3.1 | 8 | 2024-07-17 | |||
| 13 | 8FZF|1|z | F-UAA mRNA | Escherichia phage T4 | Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C) | Electron microscopy | 3.2 | 8 | 2024-06-26 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 9D7R|1|2v | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-RAY DIFFRACTION | 2.7 | 13 | |
| 2 | 9D7R|1|1v | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-RAY DIFFRACTION | 2.7 | 13 | |
| 3 | 9D7S|1|1v | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 13 | |
| 4 | 9D7T|1|1v | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-RAY DIFFRACTION | 2.7 | 13 | |
| 5 | 9D7S|1|2v | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 13 | |
| 6 | 9D7T|1|2v | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution | X-RAY DIFFRACTION | 2.7 | 13 | |
| 7 | 8FZJ|1|z | Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C) | ELECTRON MICROSCOPY | 3 | 8 | |
| 8 | 8FZI|1|z | Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B) | ELECTRON MICROSCOPY | 3.1 | 8 | |
| 9 | 8FZH|1|z | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D) | ELECTRON MICROSCOPY | 2.9 | 11 | |
| 10 | 8FZE|1|z | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A) | ELECTRON MICROSCOPY | 3 | 10 | |
| 11 | 8FZG|1|z | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A) | ELECTRON MICROSCOPY | 3.1 | 11 | |
| 12 | 8FZD|1|z | Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B) | ELECTRON MICROSCOPY | 3.1 | 10 | |
| 13 | 8FZF|1|z | Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C) | ELECTRON MICROSCOPY | 3.2 | 8 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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